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Protein Alignment CAH15 and Car2

DIOPT Version :9

Sequence 1:	NP_611525.1	Gene:	CAH15 / 37366	FlyBaseID:	FBgn0034560	Length:	332	Species:	Drosophila melanogaster
Sequence 2:	NP_062164.1	Gene:	Car2 / 54231	RGDID:	2240	Length:	260	Species:	Rattus norvegicus

Alignment Length:	255	Identity:	60/255 - (23%)
Similarity:	108/255 - (42%)	Gaps:	17/255 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    82 YNYDWDQGPHTWDTAC-----NNQSPINIDMNCVEINYFDTPLIWSHYNSIPLGIRLENNGHTLI 141
            :.|....||..|....     :.|||::||....:.:....||:.. |:.: ....:.||||:..
  Rat     5 WGYSKSNGPENWHKEFPIANGDRQSPVDIDTGTAQHDPSLQPLLIC-YDKV-ASKSIVNNGHSFN 67

  Fly   142 LRAAFPERTPSIDGGDLLGRFDFREISFRWSWASSLGSEHTLDHHHSPLEMQCLHTD---GDGCD 203
            :.....:....:..|.|.|.:...:..|.|..:...|||||::......|:..:|.:   ||...
  Rat    68 VEFDDSQDFAVLKEGPLSGSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHLVHWNTKYGDFGK 132

  Fly   204 GCSSSQGVLMISYMFDLSEHNPFLDVLIQHLAAVEQAGQVVEVPPF-PLSYLMSPFYDKFYSYNG 267
            ......|:.::.....:...:..|..:.:.|.:::..|:......| |.|.|  |....:::|.|
  Rat   133 AVQHPDGLAVLGIFLKIGPASQGLQKITEALHSIKTKGKRAAFANFDPCSLL--PGNLDYWTYPG 195

  Fly   268 SLTEPPCHRGAEWLIYPESLAISERQLNEFRQLR-DRRGSR---IARNARPVQPIGDRMV 323
            |||.||......|::..|.:.:|..|::.||:|. :..|..   :..|.||.||:.:|.:
  Rat   196 SLTTPPLLECVTWIVLKEPITVSSEQMSHFRKLNFNSEGEAEELMVDNWRPAQPLKNRKI 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.