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Protein Alignment CAH15 and Car1

DIOPT Version :9

Sequence 1:	NP_611525.1	Gene:	CAH15 / 37366	FlyBaseID:	FBgn0034560	Length:	332	Species:	Drosophila melanogaster
Sequence 2:	NP_001101130.1	Gene:	Car1 / 310218	RGDID:	1309780	Length:	261	Species:	Rattus norvegicus

Alignment Length:	266	Identity:	69/266 - (25%)
Similarity:	113/266 - (42%)	Gaps:	38/266 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    82 YNYDWDQGPHTWDTAC-----NNQSPINIDMNCVEINYFDTPLIWSHYNSI-PLGI--------R 132
            :.||...||..|....     ||||||:|..:..:           |.:|: |:.:        .
  Rat     6 WGYDSKNGPDQWSKLYPIANGNNQSPIDIKTSEAK-----------HDSSLKPVSVSYNPATAKE 59

  Fly   133 LENNGHTLILRAAFPERTPS--IDGGDLLGRFDFREISFRWSWASSLGSEHTLDHHHSPLEMQCL 195
            :.|.||:  ....|.:.:..  :.||.|...:...:..|.|..::..|||||:|......|:..:
  Rat    60 IVNVGHS--FHVVFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGAKYSGELHLV 122

  Fly   196 HTD----GDGCDGCSSSQGVLMISYMFDLSEHNPFLDVLIQHLAAVEQAGQVVEVPPFPLSYLMS 256
            |.:    ....:..|.:.|:.:|..:..:...||.|..::..|::|:..|:......|..|.|:.
  Rat   123 HWNSAKYSSAAEAISKADGLAIIGVLMKVGPANPNLQKVLDALSSVKTKGKRAPFTNFDPSSLLP 187

  Fly   257 PFYDKFYSYNGSLTEPPCHRGAEWLIYPESLAISERQLNEFRQLRDRRGSR----IARNARPVQP 317
            ...| :::|.||||.||.|....|:|..||:::|..||.:.|.|.......    :..|.||.||
  Rat   188 SSLD-YWTYFGSLTHPPLHESVTWVICKESISLSPEQLAQLRGLLSSAEGEPAVPVLSNHRPPQP 251

  Fly   318 IGDRMV 323
            :..|.|
  Rat   252 LKGRTV 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.