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Protein Alignment CAH15 and Ca4

DIOPT Version :9

Sequence 1:	NP_611525.1	Gene:	CAH15 / 37366	FlyBaseID:	FBgn0034560	Length:	332	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	263	Identity:	72/263 - (27%)
Similarity:	118/263 - (44%)	Gaps:	47/263 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    89 GPHTWDTAC--NNQSPINIDMNCVEINYFDTPLIWSHYNSIPLGIRLENNGHTLILRAAFPERTP 151
            ||..|...|  |.||||||..:..::|...||..:..|:. .....::||.|::.:...   ...
  Rat    37 GPEQWTGDCKKNQQSPINIVTSKTKLNPSLTPFTFVGYDQ-KKKWEVKNNQHSVEMSLG---EDI 97

  Fly   152 SIDGGDLLGRFDFREISFRWSWASSLGSEHTLDHHHSPLEMQCLH---TDGDGCDGCSSSQGVLM 213
            .|.||||..::...::...||..|:.||||::|..|..:||..:|   |.||......|...:.:
  Rat    98 YIFGGDLPTQYKAIQLHLHWSEESNKGSEHSIDGKHFAMEMHVVHKKMTTGDKVQDSDSKDKIAV 162

  Fly   214 ISYMFDL-SEHNPFLDVLIQHLAAVEQAGQVVEVPPFPLSYL-------MSPFYDK---FYSYNG 267
            :::|.:: :|.|.....|::.|:.:.:        ||..|.:       |.|...|   ::.|.|
  Rat   163 LAFMVEVGNEVNEGFQPLVEALSRLSK--------PFTNSTVSESCLQDMLPEKKKLSAYFRYQG 219

  Fly   268 SLTEPPCHRGAEWLIYPESLAISERQLNEFRQ-----------LRDRRGSRIARNARPVQPIGDR 321
            |||.|.|.....|.::.|.:.|.:.|..||.:           ::|        |.||:||:|:|
  Rat   220 SLTTPGCDETVIWTVFEEPIKIHKDQFLEFSKKLYYDQEQKLNMKD--------NVRPLQPLGNR 276

  Fly   322 MVY 324
            .|:
  Rat   277 QVF 279

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.