DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cib2 and chpf-2

DIOPT Version :9

Sequence 1:NP_611523.3 Gene:Cib2 / 37363 FlyBaseID:FBgn0034558 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_503830.2 Gene:chpf-2 / 186617 WormBaseID:WBGene00019108 Length:195 Species:Caenorhabditis elegans


Alignment Length:196 Identity:56/196 - (28%)
Similarity:89/196 - (45%) Gaps:45/196 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNKVVT-FTEQELDDYQDCTFFTRKEILRVHKRFREL---------RPDLVPRQMTEGQASSVK 55
            |||...: .::.|:.:..|.|.|.:.:|||::.||..|         |.|.:             
 Worm     1 MGNSNSSILSDAEMREIMDETQFNKHQILRLYTRFASLDKNGQGYLSRDDFL------------- 52

  Fly    56 VPCECIEKMPELRENPFRRRICEAF----SRDG---QGNLSFEDFLDALSVFSEQA--------P 105
                   .:|||..||...||.:||    ..||   .|.|:|..|:..|:.|...:        .
 Worm    53 -------NVPELAVNPLGDRIIDAFFTLGDSDGDSKSGQLTFRQFVRILAHFQPISKVKDNALNS 110

  Fly   106 RDIKVFYAFKIYDFDQDGFIGHADLMSCLTTMTKNELSPEEHQQIADKVIEEADVDGDGKLSILE 170
            |..|:.:|||:||.:::.:|...:....|.:|....::.::..:||||.:||||.|.|||:|..:
 Worm   111 RKDKLRFAFKMYDLNKNNYITREEFKVILNSMVGANITSDQLDKIADKTLEEADQDRDGKISFED 175

  Fly   171 F 171
            |
 Worm   176 F 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cib2NP_611523.3 FRQ1 20..180 CDD:227455 51/176 (29%)
chpf-2NP_503830.2 FRQ1 15..182 CDD:227455 52/182 (29%)
EFh 35..95 CDD:298682 19/79 (24%)
EFh 114..180 CDD:238008 23/63 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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