DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cib2 and rcvrn.1

DIOPT Version :9

Sequence 1:NP_611523.3 Gene:Cib2 / 37363 FlyBaseID:FBgn0034558 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_002937040.1 Gene:rcvrn.1 / 100302393 XenbaseID:XB-GENE-973335 Length:202 Species:Xenopus tropicalis


Alignment Length:199 Identity:45/199 - (22%)
Similarity:90/199 - (45%) Gaps:37/199 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGN-KVVTFTEQELDDYQDCTFFTRKEILRVHKRF-RELRPDLVPRQMTEGQASSVKVPCECIEK 63
            ||| |....:::.|::.|..|.|:::|:...::.| :|.....:.:|..||..|..         
 Frog     1 MGNSKSSALSKEILEELQLNTKFSQEELCTWYQSFLKECPTGRISKQQFEGIYSKF--------- 56

  Fly    64 MPELRENPFRRRICEAFSRDGQGNLSFEDFLDALSVFSEQAPRDIKVFYAFKIYDFDQDGFIGHA 128
            .|:.....:.|.:..:|..:..|.|.|::::.||.:.| ....:.|:.:||.:||.|.:|.|..:
 Frog    57 FPDADPKAYARHVFRSFDSNNDGTLDFKEYMIALHMTS-SGKANQKLEWAFSLYDVDGNGTINKS 120

  Fly   129 DLMSCLTTMTK------------NELSPEEH---------QQIADKVIEEADVDG--DGK--LSI 168
            :::..:|.:.|            :|.:||..         ::..||:.|...:.|  :.|  |.:
 Frog   121 EVLEIITAIFKMINTEDQKHLPEDENTPERRTNKIWDFFGKKDNDKLTEGEFIQGIMNNKEILRL 185

  Fly   169 LEFE 172
            ::||
 Frog   186 IQFE 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cib2NP_611523.3 FRQ1 20..180 CDD:227455 39/179 (22%)
rcvrn.1XP_002937040.1 FRQ1 14..182 CDD:227455 38/177 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X31
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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