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Protein Alignment CAH14 and Ca5a

DIOPT Version :9

Sequence 1:	NP_611519.2	Gene:	CAH14 / 37359	FlyBaseID:	FBgn0034554	Length:	295	Species:	Drosophila melanogaster
Sequence 2:	NP_062166.1	Gene:	Ca5a / 54233	RGDID:	2243	Length:	304	Species:	Rattus norvegicus

Alignment Length:	235	Identity:	59/235 - (25%)
Similarity:	95/235 - (40%)	Gaps:	20/235 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    72 QPSPITIPESNMIKRQLKMPLHWTYYEDLPMATVLENNGNTVIMRIYTANNFMPQ-LSGAELLGR 135
            |.|||.|..::.:......||..:|  |......|.|.|  ...::...::.... :||..|...
  Rat    62 QQSPINIQWTDSVYDPKLAPLRVSY--DAASCRYLWNTG--YFFQVEFDDSCEESGISGGPLGNH 122

  Fly   136 YQFVEAIFKWGSLK---SEHSIGKHNFCLELQALHRCAQLNNNFEYLTLSY-------LFALSHV 190
            |:..:..|.||:..   |||.:..|.:..||..:|..:....|::..|...       :|.....
  Rat   123 YRLKQFHFHWGATDEWGSEHMVDGHAYPAELHLVHWNSMKYENYKKATTGENGLAVIGVFLKLGA 187

  Fly   191 KNEHLKQVTDHLKWISQPGSSIELPPFHLESLLQPFGSGYFSYEGTYDNGDVVLPTTWLINRKIS 255
            .:|.|:::.|.|..:....:.:.:.||. .|.|.|....|::|.|:.....:....||::::...
  Rat   188 HHEALQRLVDILPEVRHKDTQVTMGPFD-PSCLLPACRDYWTYPGSLTTPPLAESVTWIVHKMPI 251

  Fly   256 VVDSRQLSEFEALY--GRNGNRN--CKNGREKQPLGNRNV 291
            .|...|||.|..|.  ||..:..  ..|.|..|||..|||
  Rat   252 EVSPSQLSTFRTLLFSGRGEDEEVMVNNFRPLQPLRGRNV 291

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.