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Protein Alignment CAH14 and Car2

DIOPT Version :9

Sequence 1:	NP_611519.2	Gene:	CAH14 / 37359	FlyBaseID:	FBgn0034554	Length:	295	Species:	Drosophila melanogaster
Sequence 2:	NP_062164.1	Gene:	Car2 / 54231	RGDID:	2240	Length:	260	Species:	Rattus norvegicus

Alignment Length:	255	Identity:	63/255 - (24%)
Similarity:	101/255 - (39%)	Gaps:	31/255 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 NAVGNRRLEMKLAK--QPSPITIPESNMIKRQLKMPLHWTYYEDLPMATVLENNGNTVIMRIYTA 120
            |...|...|..:|.  :.||:.|............||...|  |...:..:.|||::..:....:
  Rat    11 NGPENWHKEFPIANGDRQSPVDIDTGTAQHDPSLQPLLICY--DKVASKSIVNNGHSFNVEFDDS 73

  Fly   121 NNFMPQLSGAELLGRYQFVEAIFKWGSLK---SEHSIGKHNFCLELQALHRCAQLNNNFEY---- 178
            .:| ..|....|.|.|:.::..|.|||..   |||::.|..:..||..:|.      |.:|
  Rat    74 QDF-AVLKEGPLSGSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHLVHW------NTKYGDFG 131

  Fly   179 --------LTLSYLFALSHVKNEHLKQVTDHLKWISQPGSSIELPPFHLESLLQPFGSGYFSYEG 235
                    |.:..:|......::.|:::|:.|..|...|.......|...||| |....|::|.|
  Rat   132 KAVQHPDGLAVLGIFLKIGPASQGLQKITEALHSIKTKGKRAAFANFDPCSLL-PGNLDYWTYPG 195

  Fly   236 TYDNGDVVLPTTWLINRKISVVDSRQLSEFEAL-YGRNGNRN---CKNGREKQPLGNRNV 291
            :.....::...||::.::...|.|.|:|.|..| :...|...   ..|.|..|||.||.:
  Rat   196 SLTTPPLLECVTWIVLKEPITVSSEQMSHFRKLNFNSEGEAEELMVDNWRPAQPLKNRKI 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.