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Protein Alignment CAH14 and Car1

DIOPT Version :9

Sequence 1:	NP_611519.2	Gene:	CAH14 / 37359	FlyBaseID:	FBgn0034554	Length:	295	Species:	Drosophila melanogaster
Sequence 2:	NP_001101130.1	Gene:	Car1 / 310218	RGDID:	1309780	Length:	261	Species:	Rattus norvegicus

Alignment Length:	234	Identity:	58/234 - (24%)
Similarity:	96/234 - (41%)	Gaps:	22/234 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly    74 SPITIPESNMIKRQLKMPLHWTYYEDLPMATVLE--NNGNTVIMRIYTANNFMPQLSGAELLGRY 136
            |||.|..|.........|:..:|..    ||..|  |.|::..: ::..::....|.|..|...|
  Rat    30 SPIDIKTSEAKHDSSLKPVSVSYNP----ATAKEIVNVGHSFHV-VFDDSSNQSVLKGGPLADSY 89

  Fly   137 QFVEAIFKWGSLK---SEHSIGKHNFCLELQALH-RCAQLNNNFEYLT----LSYLFALSHV--K 191
            :..:..|.||:..   |||::....:..||..:| ..|:.::..|.::    |:.:..|..|  .
  Rat    90 RLTQFHFHWGNSNDHGSEHTVDGAKYSGELHLVHWNSAKYSSAAEAISKADGLAIIGVLMKVGPA 154

  Fly   192 NEHLKQVTDHLKWISQPGSSIELPPFHLESLLQPFGSGYFSYEGTYDNGDVVLPTTWLINRKISV 256
            |.:|::|.|.|..:...|.......|...||| |....|::|.|:..:..:....||:|.::...
  Rat   155 NPNLQKVLDALSSVKTKGKRAPFTNFDPSSLL-PSSLDYWTYFGSLTHPPLHESVTWVICKESIS 218

  Fly   257 VDSRQLSEFEALY----GRNGNRNCKNGREKQPLGNRNV 291
            :...||::...|.    |........|.|..|||..|.|
  Rat   219 LSPEQLAQLRGLLSSAEGEPAVPVLSNHRPPQPLKGRTV 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.