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Protein Alignment CAH14 and Ca5b

DIOPT Version :9

Sequence 1:	NP_611519.2	Gene:	CAH14 / 37359	FlyBaseID:	FBgn0034554	Length:	295	Species:	Drosophila melanogaster
Sequence 2:	NP_001005551.1	Gene:	Ca5b / 302669	RGDID:	1549783	Length:	317	Species:	Rattus norvegicus

Alignment Length:	255	Identity:	66/255 - (25%)
Similarity:	103/255 - (40%)	Gaps:	36/255 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    55 DVVNAVGNRRLEMKLAKQPSPITIPESNMIKRQLKMPLHWTYYEDLPMATVLE--NNGNTVIMRI 117
            |:|.| |:|:         |||.|...:.:......||..:|    ..||.|.  |||.:.::..
  Rat    56 DLVPA-GDRQ---------SPINIRWRDSVYDPGLKPLTISY----DPATCLHIWNNGYSFLVEF 106

  Fly   118 YTANNFMPQLSGAELLGRYQFVEAIFKWGSLK---SEHSIGKHNFCLELQALHRCAQLNNNFEYL 179
            ....: ...:.|..|...|:..:..|.||::.   |||::....:..||..:|..|....:||..
  Rat   107 EDTTD-KSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDA 170

  Fly   180 TLS---------YLFALSHVKNEHLKQVTDHLKWISQPGSSIELPPFHLESLLQPFGSGYFSYEG 235
            .|.         :|....|  ::.|:::.|.|..|....:.::...|. .|.|.|....|::|.|
  Rat   171 ALEENGLAVIGVFLKLGKH--HKELQKLVDTLPSIKHKDTLVKFGSFD-PSCLMPTCPDYWTYSG 232

  Fly   236 TYDNGDVVLPTTWLINRKISVVDSRQLSEFEALY----GRNGNRNCKNGREKQPLGNRNV 291
            :.....:....||:|.::...||..||.:|..|.    |....|...|.|..|||.||.|
  Rat   233 SLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTV 292

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.