DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9993 and Acsm3

DIOPT Version :9

Sequence 1:NP_611518.1 Gene:CG9993 / 37358 FlyBaseID:FBgn0034553 Length:543 Species:Drosophila melanogaster
Sequence 2:XP_006230168.1 Gene:Acsm3 / 24763 RGDID:62086 Length:581 Species:Rattus norvegicus


Alignment Length:533 Identity:131/533 - (24%)
Similarity:217/533 - (40%) Gaps:80/533 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 DPTGEELTGS--QLLEQSRRLAHAF-QRLKLQRGDVVGISAKNTTYLTEVVIAALLNGTPINPLH 109
            |..|:|:..|  :|...||:.|:.. :...|||||.|.:............:|.|..||.:.|..
  Rat    81 DGNGKEVRWSFEELGSLSRKFANILTEACSLQRGDRVMVILPKIPEWWLANVACLRTGTVLIPGT 145

  Fly   110 PDFDAETTAYMFEITKPKVIFCDLDNYQTLSAVKSSLKFKTE-----IILLTGTLPGVRNIQDLL 169
            .....:...|..:.:|.|.|..|    .||:.....:..|.|     :|:...:..|..|:::::
  Rat   146 TQLTQKDILYRLQSSKSKCIITD----DTLAPAVDIVAAKCENLHSKLIVSQHSREGWGNLKEMM 206

  Fly   170 ---ADGCTGYDEKTLFACPHLCGDDTAFIITSSGVTGLPKGVTRSHRSLLNSAKIPQLF------ 225
               :|..|..|.|      |   ::...|..:||.||.||.:..:|.|......:...|      
  Rat   207 KYASDSHTCVDTK------H---NELMAIYFTSGTTGPPKMIGHTHSSFGLGLSVNGRFWLDLIA 262

  Fly   226 ------TSDT------VLFCFSPLYWISCIFTLLASLVNGCRRIITNRPFSVAYFADLVERHQVS 278
                  ||||      ....|||....:|:|.......:....:.|...|.:..|.         
  Rat   263 SDVMWNTSDTGWAKSAWSSVFSPWTQGACVFAHYLPRFDSTSILQTLSKFPITVFC--------- 318

  Fly   279 FVLTVPHHMALLAKSPERQELAAKMQCVQSFVCSGSKVPMGIWRQLYELLGANRFAVLYGLTETG 343
               :.|....:|.::...:  :.|...::..|.:|..:...:..|..:..|.:.:.. ||.|||.
  Rat   319 ---SAPTAYRMLIQNDITR--SYKFNSLKHCVSAGEPINPEVMEQWKKKTGLDIYEG-YGQTETV 377

  Fly   344 GISKNVGG----PLGSEGRLLRNVQVRVVDPHGQSLGPNQTGQILVRL--NLRWGGYYH---NPQ 399
            .|..|..|    | ||.|:......|.::|.:|..|.|.|.|.|.|::  :..:|.:.|   ||.
  Rat   378 LICGNFKGMKIKP-GSMGKPSPAFNVEILDENGTILPPGQEGDIAVQVLPDRPFGLFTHYVDNPS 441

  Fly   400 ETQVTVTPDGKWLLTGDHGYFDDEGCLHFQSRDTDVFKYNHFPIYPKQIEDVILHLPGVHEVAVF 464
            :|..|:.  |.:.:|||.||.|::|...|.:|..||...:.:.|.|.::|..::..|.:.|.||.
  Rat   442 KTASTLR--GNFYITGDRGYMDEDGYFWFVARSDDVILSSGYRIGPFEVESALIEHPSIAESAVV 504

  Fly   465 GIPDEVSTNLTACAVVRNED-ELGAQLTEADVKGVVAQHLSDA---FHIRGGVFFVDNLPKTQNS 525
            ..||.:...:....:|.|.| :|..|   ..:|..:.:|:...   :.....:.|::.||||.:.
  Rat   505 SSPDPIRGEVVKAFIVLNPDYKLHDQ---EQLKKEIQEHVKKTTAPYKYPRKIEFIEELPKTVSG 566

  Fly   526 KVQ----RRKIWS 534
            ||:    |||.|:
  Rat   567 KVKRNELRRKEWT 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9993NP_611518.1 CaiC 21..532 CDD:223395 129/529 (24%)
AFD_class_I 45..528 CDD:302604 126/521 (24%)
Acsm3XP_006230168.1 Acs 45..575 CDD:223442 127/527 (24%)
AFD_class_I 48..578 CDD:302604 130/530 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D333840at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.