DRSC/TRiP Functional Genomics Resources

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Protein Alignment sktl and pikfyve

DIOPT Version :9

Sequence 1:NP_001286646.1 Gene:sktl / 37356 FlyBaseID:FBgn0016984 Length:792 Species:Drosophila melanogaster
Sequence 2:NP_001362234.2 Gene:pikfyve / 550069 XenbaseID:XB-GENE-989454 Length:2104 Species:Xenopus tropicalis


Alignment Length:503 Identity:119/503 - (23%)
Similarity:177/503 - (35%) Gaps:169/503 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 TQTP-----ASKLRSASSTLDASISRNPS-------TTGGKHEKKLGHRR-VAEGGEVTYKKIQS 156
            |.:|     ||.::|...|...|.|:.||       .||||.......|: ...|.:..|.::. 
 Frog  1719 TSSPSRASDASSVQSNRPTEPESQSKKPSGVLSFFRGTGGKSPDLSAQRKETLRGADSAYYQVG- 1782

  Fly   157 KQIMGSIQLGIQHTVGSLASKPKRDLLMNDFWEMETISFPPDGSSITPAHHYNDFRFKVYAPIAF 221
                   |.| :....|.|::|:.|:   |..:.:..:|......:    .::|...|.|..|.:
 Frog  1783 -------QTG-KEGAESQATEPQDDV---DGVDKQKKAFGNPHVEL----QFSDANAKFYCRIYY 1832

  Fly   222 -----RYFRDLFGIAPDDFLMSMCASPLRELSNPGASGSIFYLTTDDEFIIKTVQKKECEFLQKL 281
                 |..:.:.|.:.|||:.|: |..:...:..|.||:.||.|.||.||:|.:.:.|.:.....
 Frog  1833 AGEFHRMRKVILGSSEDDFIRSL-AHCVPWQARGGKSGAAFYATEDDRFILKQMPRLEVQSFLDF 1896

  Fly   282 LPGYY---MNLSQNPR-TLLPKFFGLYCFHY-NSKN-----VRLVAMNNLLPSDIKMHCKYDLKG 336
            .|.|:   :|..|..| |.|.|..|:|...| ||:|     :.|:.|.||.... ||...:||||
 Frog  1897 APHYFTYIINAVQMKRPTALAKILGVYRIGYKNSQNNTEKKLDLLVMENLFYGR-KMAQVFDLKG 1960

  Fly   337 SSFRRKASKAERQKASPTFKDLDFAEH-----HPNGIFLETDKYNALMSTIKRDCMVLESFQIMD 396
             |.|.:..|.:..|.|.....||  |:     ..|.:::.:...:.|.::|..|...|.|..|:|
 Frog  1961 -SLRNRNVKTDTGKESCDVVLLD--ENLLKMVRDNPLYIRSHCKSVLRASIHSDSHFLSSHLIID 2022

  Fly   397 YSLLVGIHNLDLAAKEKREERILNARAKLQRKESAAQGPPSLNPDDDAPEADQNQLQAVASYASI 461
            ||||||                                     .||...|               
 Frog  2023 YSLLVG-------------------------------------RDDTTDE--------------- 2035

  Fly   462 PGTSAGAALNRTRSMNRQRLVAHSTALESITADMDVPLEEDEDVPAGGIPARSENDERLILYIGI 526
                                                                        |.:||
 Frog  2036 ------------------------------------------------------------LVVGI 2040

  Fly   527 IDILQSYRLEKKLEHTFKS--IL-YNGDTVSVCRPSFYAKRFQDAMGK 571
            ||.::::..:||||...||  || ..|...:|..|..|..||.:||.|
 Frog  2041 IDYIRTFTWDKKLEMVVKSTGILGGQGKMPTVVSPELYRTRFCEAMDK 2088

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sktlNP_001286646.1 PIPKc 183..573 CDD:214623 96/412 (23%)
pikfyveNP_001362234.2 FYVE_PIKfyve_Fab1 160..221 CDD:277264
DEP_PIKfyve 363..444 CDD:239895
Fab1_TCP 624..883 CDD:239450
PIPKc_PIKfyve 1824..2090 CDD:340437 93/382 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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