DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sktl and Pikfyve

DIOPT Version :9

Sequence 1:NP_001286646.1 Gene:sktl / 37356 FlyBaseID:FBgn0016984 Length:792 Species:Drosophila melanogaster
Sequence 2:XP_006245133.1 Gene:Pikfyve / 316457 RGDID:1592067 Length:2129 Species:Rattus norvegicus


Alignment Length:549 Identity:126/549 - (22%)
Similarity:189/549 - (34%) Gaps:197/549 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 SLLQQELNNIAATQTPASKLRSA-------------------SSTLD-----ASISRNPSTTGGK 133
            ::.::|.::|.|......:.|:|                   :|.||     :|..|.|..:||:
  Rat  1692 AVCEKEPSSIIAFALSCKEYRNALEELSKATLWNNAEEGLPTNSALDNRPKSSSPIRLPEVSGGQ 1756

  Fly   134 HEKKLGHRRVAEGGEVTYKKIQSKQIMGSIQLGIQHTVGSLASKPKRDLLMND--FWE------- 189
                  ..|..||.....||...   |.|...|.......|:|:.:..|...|  :::       
  Rat  1757 ------TNRTVEGEPQPTKKASG---MLSFFRGTAGKSPDLSSQKRETLRGADSAYYQVGQTGKE 1812

  Fly   190 -METISFPP----DG-----SSITPAH---HYNDFRFKVYAPI----AFRYFRD-LFGIAPDDFL 236
             ||:....|    ||     ..:|..|   .::|...|.|..:    .|...|: :.|.:.:||:
  Rat  1813 GMESQGLEPQDEVDGGDTQKKQLTNPHVELQFSDANAKFYCRLYYAGEFHKMREVILGSSEEDFI 1877

  Fly   237 MSMC-ASPLRELSNPGASGSIFYLTTDDEFIIKTVQKKECEFLQKLLPGYY---MNLSQNPR-TL 296
            .|:. :||.:  :..|.||:.||.|.||.||:|.:.:.|.:......|.|:   .|..|..| |.
  Rat  1878 RSLSHSSPWQ--ARGGKSGAAFYATEDDRFILKQMPRLEVQSFLDFAPHYFNYITNAVQQKRPTA 1940

  Fly   297 LPKFFGLYCFHY-NSKN-----VRLVAMNNLLPSDIKMHCKYDLKGSSFRRKASKAERQKASPTF 355
            |.|..|:|...| ||:|     :.|:.|.||.... ||...:|||| |.|.:..|.:..|.|...
  Rat  1941 LAKILGVYRIGYKNSQNNTEKKLDLLVMENLFYGR-KMAQVFDLKG-SLRNRNVKTDTGKESCDV 2003

  Fly   356 KDLDFAEH-----HPNGIFLETDKYNALMSTIKRDCMVLESFQIMDYSLLVGIHNLDLAAKEKRE 415
            ..||  |:     ..|.:::.:...:.|.::|..|...|.|..|:|||||||             
  Rat  2004 VLLD--ENLLKMVRDNPLYIRSHSKSVLRTSIHSDAHFLSSHLIIDYSLLVG------------- 2053

  Fly   416 ERILNARAKLQRKESAAQGPPSLNPDDDAPEADQNQLQAVASYASIPGTSAGAALNRTRSMNRQR 480
                                    .||.:.|                                  
  Rat  2054 ------------------------RDDTSNE---------------------------------- 2060

  Fly   481 LVAHSTALESITADMDVPLEEDEDVPAGGIPARSENDERLILYIGIIDILQSYRLEKKLEHTFKS 545
                                                     |.:||||.::::..:||||...||
  Rat  2061 -----------------------------------------LVVGIIDYIRTFTWDKKLEMVVKS 2084

  Fly   546 --IL-YNGDTVSVCRPSFYAKRFQDAMGK 571
              || ..|...:|..|..|..||.:||.|
  Rat  2085 TGILGGQGKMPTVVSPELYRTRFCEAMDK 2113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sktlNP_001286646.1 PIPKc 183..573 CDD:214623 102/435 (23%)
PikfyveXP_006245133.1 FYVE_PIKfyve_Fab1 186..247 CDD:277264
DEP_PIKfyve 389..470 CDD:239895
Fab1_TCP 649..909 CDD:239450
BAR 1430..>1477 CDD:299863
PIPKc 1803..2116 CDD:238081 101/429 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5253
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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