DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13442 and marc-4

DIOPT Version :9

Sequence 1:NP_611511.3 Gene:CG13442 / 37349 FlyBaseID:FBgn0034546 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001348646.1 Gene:marc-4 / 171616 WormBaseID:WBGene00016903 Length:317 Species:Caenorhabditis elegans


Alignment Length:387 Identity:79/387 - (20%)
Similarity:129/387 - (33%) Gaps:146/387 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 DKDGTTADAEDPQIPACSLGLKPNVQFQKLPHPS-------HPLVSTEAVLAAATSSSYSAGPPK 126
            |:......|..|..|:.|           :|.||       .||:..|..:...:.::|..|   
 Worm     6 DRHHIFVSAPPPPPPSSS-----------IPAPSQPNRLEKEPLIDEETDMIDESRATYWKG--- 56

  Fly   127 AAATDSIATLRHCVDGATQCNNLNYES--ASNESMPSVGSLVCRICHNA----DNPEQLVSPCLC 185
                               |..|....  :|..|:.|..:.:|||||.:    .||  |:|||.|
 Worm    57 -------------------CEFLKASGLYSSKLSLQSASANMCRICHTSTSTRSNP--LISPCRC 100

  Fly   186 KGSLTYVHVHCLECWISTSR-----CTTCELCQFQYNTEQTLRYTCLQSLRLWYSRAMSRRALQE 245
            .|:|.:||..|:..|:..|.     ...||||.:.|......:   ::||.:.:....|      
 Worm   101 SGTLLFVHKACVVRWLEMSTRKMVPSPRCELCGYDYRRGNIFQ---MKSLHVPHVDRSS------ 156

  Fly   246 DCQMFSLLTLVAFGIIGTLLVGIQYYALHTHSWGLSKLWTKSWMLFFLFMTITVYFANIYMLIKS 310
             | :.::|.|:      |:|:                      |:|..:.||  .|.....|:|.
 Worm   157 -C-LLNVLFLI------TVLI----------------------MIFCGYFTI--QFIQENALLKR 189

  Fly   311 QL------TPWYRWWQ--------------------------SARDIKLILENRRPFPNPSRFLR 343
            :|      ...|.|.:                          |..|||::|       ..|.||.
 Worm   190 RLFAHSSTNTAYTWKRRGYFSGNGNGDGDGSSDGYFSRTPVSSLFDIKVVL-------CASMFLV 247

  Fly   344 SFQLETVSTTASMYTHHDQQEAPVPSSSPVIVITSS------EEETEDKLAHKWGTRLDSEV 399
            ||.|       :::|.:..:...........||..:      :.:.:.::||:.|.:..|.|
 Worm   248 SFIL-------ALFTQYKAESTIFRCIFRFFVINKNWMIKNYDIKNDPEMAHRRGLQKSSPV 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13442NP_611511.3 AmyAc_family <36..>151 CDD:298606 15/88 (17%)
RINGv 166..213 CDD:128983 22/55 (40%)
marc-4NP_001348646.1 RING_CH-C4HC3_MARCH 80..133 CDD:319409 22/54 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4782
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X270
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.770

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