DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fem-1 and AT4G03460

DIOPT Version :9

Sequence 1:NP_611508.1 Gene:Fem-1 / 37344 FlyBaseID:FBgn0034542 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001319860.1 Gene:AT4G03460 / 827916 AraportID:AT4G03460 Length:628 Species:Arabidopsis thaliana


Alignment Length:603 Identity:128/603 - (21%)
Similarity:198/603 - (32%) Gaps:218/603 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 QTHL--VNTNF-DQPDGQSLTPLTMAAM-MGNVKFVKTLLSHYDVDLDRECNVIYDGMVVYGATA 146
            :||.  ::|.| |..:...:.|.|:||: .|:..:::        |:..:.|:....:..:|.|.
plant    27 RTHSLDLSTLFNDTSETVPMGPKTIAAVRAGDETYLR--------DMKFDVNIALSSVNDHGNTM 83

  Fly   147 LWVAAGMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIVEFLIDNGADVNATNLFNNN 211
            |.:||..||..:|                        ||                          
plant    84 LHLAAAAGHTDLV------------------------CY-------------------------- 98

  Fly   212 TLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAESGHLDVVVALLDHGATLKKNELGIT 276
              ::.||.|      .|:::.|       .|..|||.||.:|||.||.||:.....:..|:.|:.
plant    99 --ILNAYPG------LLMKSNS-------MGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVA 148

  Fly   277 PALQAAERLHED-VLEAFIERPELMSLEEQITALELLGATYANDKIK---YDVNKAYGYLLRAMQ 337
            ..:..|:..|:| .|...::|..|......:.|.:.|.....||.:.   ..|......|.:.| 
plant   149 KKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTM- 212

  Fly   338 LRYSNPRGVIRKRVQPTVPAYDNWLETEN---LPELYAIKLNHHSI-HMESLAIRERILGRNNPE 398
                                   |..:.|   .....|.|:...|| |....|.|:.||.....|
plant   213 -----------------------WQHSNNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSE 254

  Fly   399 LPQAIIYRGAVMADQGR----------FYQ--CQVLWNYAIDLRMRNNVSVDRDLLRFAQLFAQI 451
            ....|.:|     |:||          :|:  |.:| :.|:|     :|.|..|           
plant   255 DASLINFR-----DEGRTCLSFGASLGYYEGFCYLL-DKALD-----SVYVSDD----------- 297

  Fly   452 LRVENHNLTLDHVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQ--DQNNQNCITALYL------ 508
                      |...|:    ...::....||.:|....||...:  |:.|||   .|::      
plant   298 ----------DGSFPI----HMAVKYGYVKILKAILKRCPDALELLDRENQN---VLHVAAKNGK 345

  Fly   509 IKIVTHLARRKKDQN----IDEEHIQ---QLFLVVRKF-------IQNDTRL------QDGQTLL 553
            |:::..:.|..||:|    |:||...   .|.|..:.:       :..|.|:      .||.|.|
plant   346 IEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTAL 410

  Fly   554 HIAVNGVMPVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTTQDRQAEM 618
            .||...   :|..||     |....|.:.|:..||.        ..|..||.|.|....|     
plant   411 DIAEKN---MDSSYT-----FFERLTWMALISAGAP--------RGPKLILSTPVTQNSD----- 454

  Fly   619 ARILELFVEAGAHLDAVN 636
                     .|.:.|.||
plant   455 ---------GGKYKDRVN 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fem-1NP_611508.1 ANK 61..196 CDD:238125 22/113 (19%)
ANK repeat 103..129 CDD:293786 6/26 (23%)
Ank_2 105..206 CDD:289560 16/101 (16%)
ANK 142..262 CDD:238125 27/119 (23%)
ANK repeat 142..173 CDD:293786 8/30 (27%)
ANK repeat 178..206 CDD:293786 2/27 (7%)
Ank_2 180..266 CDD:289560 20/85 (24%)
ANK repeat 208..239 CDD:293786 5/30 (17%)
ANK repeat 241..266 CDD:293786 13/24 (54%)
Ank_4 244..294 CDD:290365 18/50 (36%)
ANK 548..685 CDD:238125 24/89 (27%)
ANK repeat 548..594 CDD:293786 14/45 (31%)
ANK repeat 596..636 CDD:293786 8/39 (21%)
AT4G03460NP_001319860.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I2399
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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