DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fem-1 and AT3G04140

DIOPT Version :9

Sequence 1:NP_611508.1 Gene:Fem-1 / 37344 FlyBaseID:FBgn0034542 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_187064.1 Gene:AT3G04140 / 819569 AraportID:AT3G04140 Length:656 Species:Arabidopsis thaliana


Alignment Length:571 Identity:117/571 - (20%)
Similarity:206/571 - (36%) Gaps:160/571 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 SSPLRAACYEGRLDIVEFLI--DNGADVNATNL------------FNNNTLMIAAYKGHHLVVKT 227
            :||:..|...|..|:|..|:  |....|..|:|            .:.|...:|..:..  |.:.
plant    20 ASPIDCAAANGLYDVVIELLHQDTNLLVKLTSLRRIRRLETVWDDGDGNNFHVALNRSR--VARR 82

  Fly   228 LLQ-----NGSRANDQALCGATALHYAAESGHLDVVVALLDHGATL--KKNELGITPALQAAERL 285
            ||:     ||..:..:|..|...|:.||.:|.|:.|..||:....|  .:.|.|:|..|.||.|.
plant    83 LLEECEIGNGDNSLIRAGYGGWLLYTAASAGDLEFVKKLLERDPLLVFGEGEYGVTDILYAAARG 147

  Fly   286 HED-----VLEAFIERPELMSLE----EQITALELL----------------GATYANDKI---- 321
            ..|     :|:..:...::..:|    |::|..:|:                |.....|::    
plant   148 RSDDVFRLLLDFALLPADIAGVEEIDGEKLTEKQLIVKEEMVKRGVHSAARGGHVAILDELLLAN 212

  Fly   322 KYD----VNKAYGYLLRAMQLRYSNPRGVIRKRVQPTVPAYDNWLETENLPELYAIKLNHHSIHM 382
            |||    :..|||..|    |..::.|..|:. |:..:..||:.:|.::.....|:.:..:..|:
plant   213 KYDAVAKLRDAYGSTL----LHSASSRAQIQV-VKYLISKYDSIMEVKDSHGNTALHIAAYKGHL 272

  Fly   383 ESLAIRERILGRNNPELPQAIIYRGAVMADQGRFYQCQVLWNYA------IDLRMR-------NN 434
            :   :.|.::..:.|.:        :::...|..:...|:..:|      :|.:|.       .:
plant   273 D---VVEALINESPPLI--------SIVNGDGDTFLHTVVSGFAASGFKRLDRQMELLKMLVSRS 326

  Fly   435 VSVDRDLLRFAQLFAQILRVENHN-LTLDH--VLPVLAKCQQEIENNKFKIKEAKPNACPSLWQD 496
            .|||         |::|:.|.|.| .|:.|  |:..|...:.::.....:|.....|...|..  
plant   327 WSVD---------FSEIVNVRNCNGRTVIHLAVMDNLNAVRPDVVEILMRIPGVDLNVVDSYG-- 380

  Fly   497 QNNQNCITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTLLHIAVNGVM 561
                  :||:.|:|       |:..|.:..:      |::::.:....|...|:.:..:.     
plant   381 ------MTAVDLLK-------RQTPQTVVSD------LLIKRLVSAGGRSNCGEKVSRLR----- 421

  Fly   562 PVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTTQDRQAEMAR------ 620
              :|.|  ..|..|           |.|....||:     ..|.|...|  |:.|..|.      
plant   422 --EERY--GFCGSP-----------GTSFEISDSE-----IFLFTAART--DKTAANAELSPDRE 464

  Fly   621 ----ILELFVEAGAHLDAVNAAGQTAATACKLPIL---ANRLHAHQNAHTS 664
                |.|...|...|.......|  ..|..:|.:|   |.|..:.:|...|
plant   465 SFDGISECSTEISTHSKRKRRGG--GGTGARLKLLLRWAKREESEENRRLS 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fem-1NP_611508.1 ANK 61..196 CDD:238125 6/18 (33%)
ANK repeat 103..129 CDD:293786
Ank_2 105..206 CDD:289560 9/30 (30%)
ANK 142..262 CDD:238125 26/103 (25%)
ANK repeat 142..173 CDD:293786
ANK repeat 178..206 CDD:293786 9/29 (31%)
Ank_2 180..266 CDD:289560 26/104 (25%)
ANK repeat 208..239 CDD:293786 7/35 (20%)
ANK repeat 241..266 CDD:293786 9/24 (38%)
Ank_4 244..294 CDD:290365 18/56 (32%)
ANK 548..685 CDD:238125 27/130 (21%)
ANK repeat 548..594 CDD:293786 7/45 (16%)
ANK repeat 596..636 CDD:293786 10/49 (20%)
AT3G04140NP_187064.1 ANK 21..157 CDD:238125 37/137 (27%)
Ank_2 70..158 CDD:289560 25/89 (28%)
ANK 134..279 CDD:238125 32/152 (21%)
Ank_2 141..251 CDD:289560 25/114 (22%)
ANK 221..366 CDD:238125 32/169 (19%)
ANK repeat 224..256 CDD:293786 10/36 (28%)
Ank_4 225..279 CDD:290365 12/61 (20%)
Ank_2 263..377 CDD:289560 22/133 (17%)
ANK repeat 341..377 CDD:293786 7/35 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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