DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fem-1 and Fem1a

DIOPT Version :9

Sequence 1:NP_611508.1 Gene:Fem-1 / 37344 FlyBaseID:FBgn0034542 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001020877.1 Gene:Fem1a / 316131 RGDID:1561112 Length:654 Species:Rattus norvegicus


Alignment Length:694 Identity:224/694 - (32%)
Similarity:348/694 - (50%) Gaps:99/694 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 NLHL----AARSGQMLSFVEILNSVSCRAVQTHLVNTNFDQPDGQSL---TPLTMAAMMGNVKFV 117
            :||.    ||..|::|...::|.......::..|         |:..   |||.:||..|::..|
  Rat     2 DLHTAVYNAAHDGKLLLLQKLLAGRGREEIEELL---------GEVAGGGTPLLIAARRGHLDVV 57

  Fly   118 KTLLSHYDVDLDRECNVIYDGMVVYGATALWVAAGMGHLQIVKMLVQAGAAINHNTKAQSSPLRA 182
            :.|:.:....::...:|.:||..:.||..||.|:..|||.:|:.|::.||::|..|:..|:||||
  Rat    58 EYLVDNCGASVEASGSVHFDGETIEGAPPLWAASAAGHLAVVRSLLRRGASVNRTTRTNSTPLRA 122

  Fly   183 ACYEGRLDIVEFLI-DNGADVNATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATAL 246
            ||::|.||:|.:|: ::.||:...|...:..|||:.||||..:.:.||:.|::.|.::..|.|||
  Rat   123 ACFDGHLDVVRYLVGEHKADLEVANRHGHTCLMISCYKGHREIARYLLERGAQVNRRSAKGNTAL 187

  Fly   247 HYAAESGHLDVVVALLDHGATLKKNELGITPALQAAERLHEDVLEAFI-ERP--------EL--- 299
            |..||||.|:::..||...|.::::..|:||.|.|:...|.:::|..| |:|        ||   
  Rat   188 HDCAESGSLEILQLLLGCHARMERDGYGMTPLLAASVTGHTNIVEYLIQEQPGHGQLSGTELPGE 252

  Fly   300 ------------------------MSLEEQITALELLGATYANDKIKYDVNKAYGYLLRAMQLRY 340
                                    .|.|..:.|||||||||. || |.|:..|..:..|||:||:
  Rat   253 GSSQMAGNHCSTPEEAEPYESCCPTSREAAVEALELLGATYV-DK-KRDLLGALKHWRRAMELRH 315

  Fly   341 SNPRGVIRKRVQPTVPAYDNWLETENLPELYAIKLNHHSIHMESLAIRERILGRNNPELPQAIIY 405
            .....:.:...|..|.|||...|.....||.|:..:...:.|::|.|||||||.::|:....|.|
  Rat   316 QGGDYLPKPEPQQLVLAYDYSREVSTPQELEALITDPDEMRMQALLIRERILGPSHPDTSYYIRY 380

  Fly   406 RGAVMADQGRFYQCQVLWNYAIDLRMRN----NVSVDRDLLRFAQLFAQIL--RVENHNLTLD-- 462
            ||||.||.|.|.:|..||.||:|::..|    :.......|.||:||:.:|  |....||.:.  
  Rat   381 RGAVYADSGNFERCIRLWKYALDMQQNNLEPLSPMTASSFLSFAELFSYVLQDRSAKGNLGMQLG 445

  Fly   463 --HVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQDQNNQNCITALYLIKIVTHLARRKKDQNID 525
              .::.||:|..:|:|......||...:|       |..:.....|:|:.::     .|.:....
  Rat   446 FADLMGVLSKGVREVERALQLPKEPGDSA-------QFTKAIAIILHLLYLL-----EKVECTPS 498

  Fly   526 EEHIQQLFLVVRKFIQNDTRLQDGQTLLHIAVNGVMPVDEFYTN----EMCRFPCYATALVLVHC 586
            :||::.  ..|.:.::...|.::|.|.||:|      ||:..||    .:..||......||:.|
  Rat   499 QEHLKH--QTVYRLLKCAPRGKNGFTPLHMA------VDKETTNVGRYRVGIFPSLQVVKVLLDC 555

  Fly   587 GASVVAVDSDRNTPLHILVTKVNTTQDRQAEMARILELFVEAGAHLDAVNAAGQTAATACKLPIL 651
            ||...:.|.|.|||||:..         |.....|::..:|||||:||.||..:||.......:|
  Rat   556 GADPDSRDFDNNTPLHVAA---------QNNCPAIMDALIEAGAHMDATNAFKKTAYELLDSKLL 611

  Fly   652 ANRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQMH 695
            |.......| :.:|:|||||::..|::.:||.||.:||||||:|
  Rat   612 AKSTMQPFN-YVTLQCLAARALDRNKVPYKGFIPEELEAFIQLH 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fem-1NP_611508.1 ANK 61..196 CDD:238125 45/141 (32%)
ANK repeat 103..129 CDD:293786 8/25 (32%)
Ank_2 105..206 CDD:289560 37/101 (37%)
ANK 142..262 CDD:238125 50/120 (42%)
ANK repeat 142..173 CDD:293786 13/30 (43%)
ANK repeat 178..206 CDD:293786 13/28 (46%)
Ank_2 180..266 CDD:289560 36/86 (42%)
ANK repeat 208..239 CDD:293786 11/30 (37%)
ANK repeat 241..266 CDD:293786 12/24 (50%)
Ank_4 244..294 CDD:290365 19/49 (39%)
ANK 548..685 CDD:238125 48/140 (34%)
ANK repeat 548..594 CDD:293786 16/49 (33%)
ANK repeat 596..636 CDD:293786 15/39 (38%)
Fem1aNP_001020877.1 ANK 1 2..31 7/28 (25%)
ANK repeat 40..72 CDD:293786 8/31 (26%)
ANK 2 40..70 8/29 (28%)
Ank_4 41..103 CDD:290365 20/61 (33%)
ANK 43..70 CDD:197603 8/26 (31%)
ANK 82..203 CDD:238125 50/120 (42%)
ANK repeat 82..113 CDD:293786 13/30 (43%)
ANK 3 82..111 12/28 (43%)
Ank_2 87..179 CDD:289560 38/91 (42%)
ANK repeat 115..147 CDD:293786 14/31 (45%)
ANK 4 115..145 14/29 (48%)
ANK repeat 149..179 CDD:293786 11/29 (38%)
ANK 5 149..178 10/28 (36%)
ANK 177..>236 CDD:238125 21/58 (36%)
ANK repeat 182..211 CDD:293786 13/28 (46%)
ANK 6 182..211 13/28 (46%)
Ank_4 183..235 CDD:290365 20/51 (39%)
ANK 7 214..243 10/28 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 241..265 2/23 (9%)
TPR 1 283..317 19/35 (54%)
TPR 2 375..408 16/32 (50%)
ANK 500..602 CDD:238125 38/118 (32%)
Ank_5 516..573 CDD:290568 24/62 (39%)
ANK repeat 519..563 CDD:293786 16/49 (33%)
ANK 8 519..561 16/47 (34%)
Ank_5 552..605 CDD:290568 24/61 (39%)
ANK repeat 565..596 CDD:293786 15/39 (38%)
ANK 9 565..594 13/37 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0508
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133963at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X856
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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