DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fem-1 and Fem1c

DIOPT Version :9

Sequence 1:NP_611508.1 Gene:Fem-1 / 37344 FlyBaseID:FBgn0034542 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001100402.1 Gene:Fem1c / 302288 RGDID:1309322 Length:617 Species:Rattus norvegicus


Alignment Length:652 Identity:230/652 - (35%)
Similarity:356/652 - (54%) Gaps:65/652 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 AARSGQMLSFVEILNSVSCRAVQTHLVN--TNFDQPDGQSLTPLTMAAMMGNVKFVKTLLSHYDV 126
            |||.|::....::|.|.| :|..:.|::  ||       ..|||.|||..|::..|:.||.....
  Rat    10 AARDGKLRLLTKLLASKS-KAEVSSLISEKTN-------GATPLLMAARYGHLDMVEFLLEQCSA 66

  Fly   127 DLDRECNVIYDGMVVYGATALWVAAGMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDI 191
            .::...:|.:||..:.||..||.|:..|||::|:.|:..||::|:.|...|:||||||::|.|:|
  Rat    67 SIEVGGSVNFDGETIEGAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEI 131

  Fly   192 VEFLIDNGADVNATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAESGHLD 256
            |::|:::.||:..:|...:..|||:.||||..:.:.||:.|:..|.:::.|.||||..||||.||
  Rat   132 VKYLVEHKADLEVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLD 196

  Fly   257 VVVALLDHGATLKKNELGITPALQAAERLHEDVLEAFIERPELMSLEEQITALELLGATYANDKI 321
            ::..||.:.|.::|:..|:||.|.|:...|.:::: |:......|..|:|.||||||||:. || 
  Rat   197 IMKMLLMYCAKMEKDGYGMTPLLSASVTGHTNIVD-FLTHHAQTSKTERINALELLGATFV-DK- 258

  Fly   322 KYDVNKAYGYLLRAMQLRYSNPRGVIRKRV-QPTVPAYDNWLETENLPELYAIKLNHHSIHMESL 385
            |.|:..|..|..:||.:|||:...:|.|.| |..:.|||...|..:..||..:..:...:.|::|
  Rat   259 KRDLLGALKYWKKAMNMRYSDRTNIISKPVPQTLIMAYDYAKEVNSAEELEGLIADPDEMRMQAL 323

  Fly   386 AIRERILGRNNPELPQAIIYRGAVMADQGRFYQCQVLWNYAIDLRMRN----NVSVDRDLLRFAQ 446
            .|||||||.::|:....|.|||||.||.|.|.:|..||.||:|::..|    :......||.||:
  Rat   324 LIRERILGPSHPDTSYYIRYRGAVYADSGNFKRCINLWKYALDMQQSNLDPLSPMTASSLLSFAE 388

  Fly   447 LFAQILRVENHNL-----TLDHVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQD--QNNQNCIT 504
            ||:.:|:.....|     |.|.::.:|.|...|||      :..|...||:   |  |.|:....
  Rat   389 LFSFMLQDRAKGLLGTTVTFDDLMGILCKSVLEIE------RAIKQTQCPA---DPLQLNKALSI 444

  Fly   505 ALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTLLHIAVN------GVMPV 563
            .|:||.::     .|....::::|.::  ..:.:|::...|.::..:.||:||:      |..||
  Rat   445 ILHLICLL-----EKVPCTLEQDHFKK--QTIYRFLKLHPRGKNNFSPLHLAVDKNTTCVGRYPV 502

  Fly   564 DEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTTQDRQAEMARILELFVEA 628
                    |:||......:|:.|||.|...|||.|:||||  ..:|...|       |:.|.:::
  Rat   503 --------CKFPSLQVTAILIECGADVNVRDSDDNSPLHI--AALNNHPD-------IMNLLIKS 550

  Fly   629 GAHLDAVNAAGQTAATACKLPILANRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQ 693
            |||.||.|...|||:.......:|..|....| ||:|:|||||.|..:|:.:||.||.:||.|:.
  Rat   551 GAHFDATNLHKQTASDLLDEKEIAKNLIQPIN-HTTLQCLAARVIVNHRIYYKGNIPEKLETFVS 614

  Fly   694 MH 695
            :|
  Rat   615 LH 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fem-1NP_611508.1 ANK 61..196 CDD:238125 49/133 (37%)
ANK repeat 103..129 CDD:293786 10/25 (40%)
Ank_2 105..206 CDD:289560 39/100 (39%)
ANK 142..262 CDD:238125 51/119 (43%)
ANK repeat 142..173 CDD:293786 13/30 (43%)
ANK repeat 178..206 CDD:293786 13/27 (48%)
Ank_2 180..266 CDD:289560 37/85 (44%)
ANK repeat 208..239 CDD:293786 11/30 (37%)
ANK repeat 241..266 CDD:293786 13/24 (54%)
Ank_4 244..294 CDD:290365 20/49 (41%)
ANK 548..685 CDD:238125 51/142 (36%)
ANK repeat 548..594 CDD:293786 15/51 (29%)
ANK repeat 596..636 CDD:293786 15/39 (38%)
Fem1cNP_001100402.1 Ank_2 10..110 CDD:403870 36/107 (34%)
ANK repeat 40..75 CDD:293786 11/41 (27%)
ANK repeat 82..113 CDD:293786 13/30 (43%)
Ank_2 87..178 CDD:403870 38/90 (42%)
ANK repeat 118..146 CDD:293786 13/27 (48%)
ANK repeat 148..179 CDD:293786 11/30 (37%)
Ank_2 153..236 CDD:403870 33/83 (40%)
PHA02876 <164..>568 CDD:165207 149/439 (34%)
ANK repeat 181..209 CDD:293786 14/27 (52%)
ANKYR <462..599 CDD:223738 51/156 (33%)
ANK repeat 481..525 CDD:293786 15/51 (29%)
ANK repeat 527..558 CDD:293786 15/39 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0508
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133963at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X856
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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