DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fem-1 and Fem1a

DIOPT Version :9

Sequence 1:NP_611508.1 Gene:Fem-1 / 37344 FlyBaseID:FBgn0034542 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_034322.3 Gene:Fem1a / 14154 MGIID:1335089 Length:654 Species:Mus musculus


Alignment Length:734 Identity:233/734 - (31%)
Similarity:354/734 - (48%) Gaps:132/734 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EAHTSIYDGYPPDFGYFNMAHGMLVEISEEIRAKFPHEPRLRFSQLNNLHLAARSGQMLSFVEIL 77
            :.||::|          |.||.          .|.|...:|         ||.|..:.|.  |:|
Mouse     2 DLHTAVY----------NAAHD----------GKLPLLQKL---------LAGRGREELE--ELL 35

  Fly    78 NSVSCRAVQTHLVNTNFDQPDGQSLTPLTMAAMMGNVKFVKTLLSHYDVDLDRECNVIYDGMVVY 142
            ..|:...                  |||.:||..|::..|:.|:.|....::...:|.:||..:.
Mouse    36 GEVAGGG------------------TPLLIAARRGHLDVVEYLVDHCGASVEASGSVHFDGETIE 82

  Fly   143 GATALWVAAGMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIVEFLI-DNGADVNATN 206
            ||..||.|:..|||.:|:.|::.||::|..|:..|:||||||::|.||:|.:|: ::.||:...|
Mouse    83 GAPPLWAASAAGHLAVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLDVVRYLVGEHKADLEVAN 147

  Fly   207 LFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAESGHLDVVVALLDHGATLKKN 271
            ...:..|||:.||||..:.:.||:.|::.|.::..|.||||..||||.|:::..||...|.::::
Mouse   148 RHGHTCLMISCYKGHREIARYLLERGAQVNRRSAKGNTALHDCAESGSLEILQLLLGCHARMERD 212

  Fly   272 ELGITPALQAAERLHEDVLEAFI-ERP--------EL---------------------------M 300
            ..|:||.|.|:...|.:::|..| |:|        ||                           .
Mouse   213 GYGMTPLLAASVTGHTNIVEYLIQEQPGHEQLSGTELPGEGSSQVAGNHCSTPEEAEPYESCCPT 277

  Fly   301 SLEEQITALELLGATYANDKIKYDVNKAYGYLLRAMQLRYSNPRGVIRKRVQPTVPAYDNWLETE 365
            |.|..:.|||||||||. || |.|:..|..:..|||:||:.....:.:...|..|.|||...|..
Mouse   278 SREAAVEALELLGATYV-DK-KRDLLGALKHWRRAMELRHQGGGYLPKPEPQQLVLAYDYSREVT 340

  Fly   366 NLPELYAIKLNHHSIHMESLAIRERILGRNNPELPQAIIYRGAVMADQGRFYQCQVLWNYAIDLR 430
            ...||.|:..:...:.|::|.|||||||.::|:....|.|||||.||.|.|.:|..||.||:|::
Mouse   341 TPQELEALITDPDEMRMQALLIRERILGPSHPDTSYYIRYRGAVYADSGNFERCIRLWKYALDMQ 405

  Fly   431 MRN----NVSVDRDLLRFAQLFAQIL--RVENHNLTLD----HVLPVLAKCQQEIENNKFKIKEA 485
            ..|    :.......|.||:||:.:|  |....||.:.    .::.||:|..:|:|......||.
Mouse   406 QNNLEPLSPMTASSFLSFAELFSYVLQDRSAKGNLGMQLGFADLMGVLSKGVREVERALQLPKEP 470

  Fly   486 KPNACPSLWQDQNNQNCITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQ 550
            ..:|       |..:.....|:|:.::     .|.:....:||::.  ..|.:.::...|.::|.
Mouse   471 GDSA-------QFTKAIAIILHLLYLL-----EKVECTPSQEHLKH--QTVYRLLKCAPRGKNGF 521

  Fly   551 TLLHIAVNGVMPVDEFYTN----EMCRFPCYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTT 611
            |.||:|      ||:..||    .:..||......||:.|||...:.|.|.||||||..      
Mouse   522 TPLHMA------VDKETTNVGRYRVGVFPSLQVVKVLLDCGADPDSRDFDNNTPLHIAA------ 574

  Fly   612 QDRQAEMARILELFVEAGAHLDAVNAAGQTAATACKLPILANRLHAHQNAHTSLKCLAARSIATN 676
               |.....|::..:|||||:||.||..:||.......:||.......| :.:|:|||||::..|
Mouse   575 ---QNNCPAIMDALIEAGAHMDATNAFKKTAYELLDSKLLAKSTVQPFN-YVTLQCLAARALDRN 635

  Fly   677 RLNFKGLIPTQLEAFIQMH 695
            ::.:||.||.:||||||:|
Mouse   636 KVPYKGFIPEELEAFIQLH 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fem-1NP_611508.1 ANK 61..196 CDD:238125 44/134 (33%)
ANK repeat 103..129 CDD:293786 9/25 (36%)
Ank_2 105..206 CDD:289560 38/101 (38%)
ANK 142..262 CDD:238125 50/120 (42%)
ANK repeat 142..173 CDD:293786 13/30 (43%)
ANK repeat 178..206 CDD:293786 13/28 (46%)
Ank_2 180..266 CDD:289560 36/86 (42%)
ANK repeat 208..239 CDD:293786 11/30 (37%)
ANK repeat 241..266 CDD:293786 12/24 (50%)
Ank_4 244..294 CDD:290365 19/49 (39%)
ANK 548..685 CDD:238125 49/140 (35%)
ANK repeat 548..594 CDD:293786 16/49 (33%)
ANK repeat 596..636 CDD:293786 16/39 (41%)
Fem1aNP_034322.3 ANK repeat 2..33 CDD:293786 13/61 (21%)
ANK 1 2..31 12/57 (21%)
Ank_2 3..112 CDD:289560 41/157 (26%)
ANK repeat 40..72 CDD:293786 9/49 (18%)
ANK 2 40..70 9/47 (19%)
ANK 43..70 CDD:197603 9/26 (35%)
ANK 82..203 CDD:238125 50/120 (42%)
ANK repeat 82..113 CDD:293786 13/30 (43%)
ANK 3 82..111 12/28 (43%)
Ank_2 87..179 CDD:289560 38/91 (42%)
ANK repeat 115..147 CDD:293786 14/31 (45%)
ANK 4 115..145 14/29 (48%)
ANK repeat 149..179 CDD:293786 11/29 (38%)
ANK 5 149..178 10/28 (36%)
ANK 177..>236 CDD:238125 21/58 (36%)
ANK repeat 182..211 CDD:293786 13/28 (46%)
ANK 6 182..211 13/28 (46%)
Ank_4 183..235 CDD:290365 20/51 (39%)
ANK 7 214..243 10/28 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..265 2/22 (9%)
TPR 1 283..317 19/35 (54%)
TPR 2 375..408 16/32 (50%)
ANK 500..602 CDD:238125 39/118 (33%)
Ank_5 516..573 CDD:290568 24/62 (39%)
ANK repeat 519..563 CDD:293786 16/49 (33%)
ANK 8 519..561 16/47 (34%)
Ank_5 552..605 CDD:290568 25/61 (41%)
ANK repeat 565..596 CDD:293786 16/39 (41%)
ANK 9 565..594 14/37 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0508
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133963at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X856
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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