DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fem-1 and fem1c

DIOPT Version :10

Sequence 1:NP_611508.1 Gene:Fem-1 / 37344 FlyBaseID:FBgn0034542 Length:702 Species:Drosophila melanogaster
Sequence 2:XP_002931764.1 Gene:fem1c / 100493200 XenbaseID:XB-GENE-998529 Length:617 Species:Xenopus tropicalis


Alignment Length:651 Identity:224/651 - (34%)
Similarity:349/651 - (53%) Gaps:63/651 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 AARSGQMLSFVEIL-NSVSCRAVQTHLVNTNFDQPDGQSLTPLTMAAMMGNVKFVKTLLSHYDVD 127
            |||.|::....::| |......|......||       ..|||.|||..|::..|..||......
 Frog    10 AARDGKLRLLSKLLENKAKDEVVVLMSEKTN-------GATPLLMAARYGHLDMVDYLLDQCSAS 67

  Fly   128 LDRECNVIYDGMVVYGATALWVAAGMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIV 192
            ::...:|.:||..:.||..||.|:..|||::|:.|:..||::|:.|...|:||||||::|.|:||
 Frog    68 VEIGGSVNFDGETIEGAPPLWAASAAGHLKVVQSLLDHGASVNNTTLTNSTPLRAACFDGHLEIV 132

  Fly   193 EFLIDNGADVNATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAESGHLDV 257
            ::|:::.||:...|...:..|||:.||||..:.:.||:.|:..|.:::.|.||||..||||.|::
 Frog   133 KYLVEHKADLEVANRHGHTCLMISCYKGHKEIAQFLLEKGADVNRKSVKGNTALHDCAESGSLEI 197

  Fly   258 VVALLDHGATLKKNELGITPALQAAERLHEDVLEAFIERPELMSLEEQITALELLGATYANDKIK 322
            :..||.:||.::|:..|:||.|.|:...|.::::...:.|:...: |:|.||||||||:. || |
 Frog   198 MQMLLKYGARMEKDGYGMTPLLSASVTGHTNIVDFLTQHPQTSKI-ERINALELLGATFV-DK-K 259

  Fly   323 YDVNKAYGYLLRAMQLRYSNPRGVIRK-RVQPTVPAYDNWLETENLPELYAIKLNHHSIHMESLA 386
            .|:..|..|..|||.:|||:...:|.| ..|..:.|||...|.....||..:..:...:.|::|.
 Frog   260 RDLLGALKYWKRAMDMRYSDRTNIISKPEPQTLIMAYDYAREVNTAEELDNLIADPDEMRMQALL 324

  Fly   387 IRERILGRNNPELPQAIIYRGAVMADQGRFYQCQVLWNYAIDLRMRN----NVSVDRDLLRFAQL 447
            |||||||.::|:....|.|||||.||.|.|.:|..||.||:|::..|    :......||.||:|
 Frog   325 IRERILGPSHPDTSYYIRYRGAVYADSGNFKRCINLWKYALDMQQNNLDPLSPMTASSLLSFAEL 389

  Fly   448 FAQILRVENHNL-----TLDHVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQDQNNQNCITALY 507
            |:.:|:.....|     |.|.::.:|.|...||:.   .:|:..|.  |.  |.|.|:.....|:
 Frog   390 FSFMLQDRAKGLLGTTVTFDDLMGILCKSVMEIDR---AVKQTAPP--PD--QVQLNKALSIILH 447

  Fly   508 LIKIVTHLARRKKDQNIDEEHI--QQLFLVVRKFIQNDTRLQDGQTLLHIAVN------GVMPVD 564
            ||.::     .|...:.|:||.  |.::    :|::...:.::..:.||:||:      |..|| 
 Frog   448 LICLL-----EKVPCSPDQEHFKKQNIY----RFLKLHPKGKNNFSPLHLAVDKNTTCVGRYPV- 502

  Fly   565 EFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLHILVTKVNTTQDRQAEMARILELFVEAG 629
                   |:||.:....:|:.|||.|...|:::|:||||  ..:|...|       |:.|.|::|
 Frog   503 -------CKFPSFQVTAILLECGADVNVRDAEQNSPLHI--AALNNHPD-------IMNLLVKSG 551

  Fly   630 AHLDAVNAAGQTAATACKLPILANRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQM 694
            ||.|:.|:..|||........:|..|....| ||:|:|||||.|..:.:.:|..||.:||:|:.:
 Frog   552 AHFDSTNSHNQTACDLLDEKEMAKNLIQPIN-HTTLQCLAARVIVKHNIQYKQEIPEKLESFVLL 615

  Fly   695 H 695
            |
 Frog   616 H 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fem-1NP_611508.1 ANKYR 89..335 CDD:440430 93/245 (38%)
ANK repeat 103..129 CDD:293786 10/25 (40%)
ANK repeat 142..173 CDD:293786 13/30 (43%)
ANK repeat 178..206 CDD:293786 13/27 (48%)
ANK repeat 208..239 CDD:293786 11/30 (37%)
ANK repeat 241..266 CDD:293786 12/24 (50%)
ANKYR 447..>642 CDD:440430 57/207 (28%)
ANK repeat 548..594 CDD:293786 15/51 (29%)
ANK repeat 596..636 CDD:293786 14/39 (36%)
fem1cXP_002931764.1 ANKYR 1..284 CDD:440430 106/283 (37%)
ANK repeat 5..38 CDD:293786 7/27 (26%)
ANK repeat 40..75 CDD:293786 11/41 (27%)
ANK repeat 82..113 CDD:293786 13/30 (43%)
ANK repeat 118..146 CDD:293786 13/27 (48%)
ANK repeat 148..179 CDD:293786 11/30 (37%)
ANK repeat 181..209 CDD:293786 14/27 (52%)
ANKYR <478..>564 CDD:440430 32/102 (31%)
ANK repeat 481..525 CDD:293786 15/51 (29%)
ANK repeat 527..552 CDD:293786 10/33 (30%)

Return to query results.
Submit another query.