DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and RLP35

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001319521.1 Gene:RLP35 / 820279 AraportID:AT3G11080 Length:943 Species:Arabidopsis thaliana


Alignment Length:855 Identity:183/855 - (21%)
Similarity:308/855 - (36%) Gaps:262/855 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 TSSTIPSSVTSPTT-----------------PTAYVVSAAAVPALVAGR-----GKSKSTSGKYV 103
            |.|..|:|:..|.|                 ||.::.......||:..:     ||..|....|.
plant     2 TGSWNPTSIIIPVTLSFLLSFIHNFADVVAAPTRHLCLPEQRDALLELKNEFEIGKPSSNDYCYR 66

  Fly   104 NKSSPRKRKAEQVSSLPLPVDDALMEWK----CPNITGTRNAELECGCDLPHTLRCNIDLHGMML 164
            |.|        :||  |.|..::   |:    |.|..|..       ||..         .|.::
plant    67 NNS--------RVS--PHPTTES---WRNNSDCCNWEGIT-------CDTK---------SGEVI 102

  Fly   165 LADRLRTSPYSISLLDCSLRNVTFLSDAKIFDNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALG 229
            ..|           |.||....:|.|::.:|...:|..|.::..::.....|: :|....|.:|.
plant   103 ELD-----------LSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDLDGEIPSS-IGNLSHLTSLH 155

  Fly   230 LPGNALMSVPWNALSTLSALERLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNL 294
            |..|..:.:..:::..||.|..|.|::|:......:....|:.|..||||:||.|.....:..||
plant   156 LSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNL 220

  Fly   295 RKLEVLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIK 359
            ..|..|.|..|..  :.|...|:.....|..|.|..||..|.: ..:...:..|..|.::.|.:.
plant   221 SNLTFLSLPSNDF--FGQIPSSIGNLARLTYLYLSYNNFVGEI-PSSFGNLNQLIVLQVDSNKLS 282

  Fly   360 SIQNKALANFSRLVSLSLRHNQ--------IDVL--------QDHAF--------FGLGALDSLD 400
            .....:|.|.:||.:|.|.|||        |.:|        .::||        |.:..|..||
plant   283 GNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLD 347

  Fly   401 LSYNGIVA------ISSAS-LQH---------------LSR---LTVLDLTH------------- 427
            ||.|.:..      |||.| ||:               |||   ||:.||:|             
plant   348 LSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSIF 412

  Fly   428 -----------NFLRALTSDLIAPLP---SLRELRLAGNDISIVARNAMDG---ARELESLQMQE 475
                       ::|...|.||...||   :||.|.::||.:|...::::..   ::.::||.:. 
plant   413 SHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLS- 476

  Fly   476 NPLSCDCSIRPFAEWLQESQLHSSLSASCVTPPRLEGAPLLQVP--VETLS----CDMDNVEKDN 534
                 .|.|..|.|.|:...   .|....|:..:::|    |||  :.||.    .::.|     
plant   477 -----GCGITDFPEILRTQH---ELGFLDVSNNKIKG----QVPGWLWTLPNLFYLNLSN----- 524

  Fly   535 ANIMQHLETLAKPNQTSPIKDLSEEIILHELHFSTDY-GLILTWL--------LNLSKKDYMCDA 590
             |.....|:.:|.:..|.::..|   ::|....:.:: |.|.:::        |:||:.:|    
plant   525 -NTFISFESSSKKHGLSSVRKPS---MIHLFASNNNFTGKIPSFICGLRSLNTLDLSENNY---- 581

  Fly   591 IFVYKEEHINEILIDNSPIHCESK------VVN-GQNTVSVIVP-----DSSSLEIGESYRFCLV 643
                          :.|...|..|      |:| .||.:|..:|     ...||::|.:      
plant   582 --------------NGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFESLRSLDVGHN------ 626

  Fly   644 MIQEQKPDSELNIGCSNITRLERSSPGAVPVSRQYQRRPYYNANELKPEV-----------VHDA 697
            ::..:.|.|.:..  ||:..|.      |..:|.....|::.::..|.:|           :|:|
plant   627 LLVGKLPRSLIRF--SNLEVLN------VESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIHEA 683

  Fly   698 G----EDYQVNQRRFN--------------SVVGSQPQQTQQSTLLHSYTVIDSLNKSFLPGLGL 744
            .    ....::...||              |.:|....|:.:..:.......||:   .|...||
plant   684 TFPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSM---VLMNKGL 745

  Fly   745 GVLVTSVLVL 754
            .:.:..:|.:
plant   746 AMELVRILTI 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 44/182 (24%)
leucine-rich repeat 179..199 CDD:275378 6/19 (32%)
leucine-rich repeat 200..223 CDD:275380 4/22 (18%)
leucine-rich repeat 225..248 CDD:275380 5/22 (23%)
LRR_8 249..307 CDD:290566 19/57 (33%)
leucine-rich repeat 249..272 CDD:275380 5/22 (23%)
LRR_RI <270..479 CDD:238064 74/287 (26%)
leucine-rich repeat 273..296 CDD:275380 10/22 (45%)
leucine-rich repeat 297..322 CDD:275380 6/24 (25%)
LRR_8 322..382 CDD:290566 18/67 (27%)
leucine-rich repeat 323..347 CDD:275380 6/23 (26%)
leucine-rich repeat 348..371 CDD:275380 5/22 (23%)
LRR_8 370..428 CDD:290566 32/130 (25%)
leucine-rich repeat 372..395 CDD:275380 11/46 (24%)
leucine-rich repeat 396..419 CDD:275380 13/44 (30%)
LRR_8 418..478 CDD:290566 21/92 (23%)
leucine-rich repeat 420..443 CDD:275380 11/49 (22%)
leucine-rich repeat 444..467 CDD:275380 6/25 (24%)
LRRCT 476..526 CDD:214507 13/55 (24%)
RLP35NP_001319521.1 LRRNT_2 39..95 CDD:311940 16/75 (21%)
PLN00113 79..>658 CDD:331614 147/666 (22%)
leucine-rich repeat 103..123 CDD:275380 6/30 (20%)
leucine-rich repeat 127..150 CDD:275380 4/23 (17%)
leucine-rich repeat 151..174 CDD:275380 5/22 (23%)
leucine-rich repeat 175..198 CDD:275380 5/22 (23%)
leucine-rich repeat 199..222 CDD:275380 10/22 (45%)
leucine-rich repeat 223..246 CDD:275380 6/24 (25%)
leucine-rich repeat 247..270 CDD:275380 6/23 (26%)
leucine-rich repeat 271..294 CDD:275380 5/22 (23%)
leucine-rich repeat 295..318 CDD:275380 8/22 (36%)
leucine-rich repeat 319..337 CDD:275380 2/17 (12%)
leucine-rich repeat 343..367 CDD:275380 9/23 (39%)
leucine-rich repeat 368..388 CDD:275380 3/19 (16%)
leucine-rich repeat 392..417 CDD:275380 5/24 (21%)
leucine-rich repeat 443..469 CDD:275380 6/25 (24%)
leucine-rich repeat 470..492 CDD:275380 7/30 (23%)
leucine-rich repeat 493..516 CDD:275380 8/26 (31%)
leucine-rich repeat 517..541 CDD:275380 4/29 (14%)
leucine-rich repeat 542..570 CDD:275380 4/30 (13%)
leucine-rich repeat 571..594 CDD:275380 7/40 (18%)
leucine-rich repeat 596..617 CDD:275380 6/20 (30%)
leucine-rich repeat 618..641 CDD:275380 5/30 (17%)
LRR_8 640..698 CDD:316378 10/63 (16%)
leucine-rich repeat 642..665 CDD:275380 4/28 (14%)
leucine-rich repeat 716..803 CDD:275380 8/43 (19%)
PLN00113 <758..864 CDD:331614
leucine-rich repeat 804..825 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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