DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and Flrt3

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001165631.1 Gene:Flrt3 / 71436 MGIID:1918686 Length:649 Species:Mus musculus


Alignment Length:600 Identity:132/600 - (22%)
Similarity:227/600 - (37%) Gaps:148/600 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 CPNITGTRNAELECGCDLPHTLRCNIDLHGMMLLADRLRTS-PYSISLLDCSLRNVTFLSDAKIF 195
            ||::         |.||.           |.:...||..|| |..|.....:|    :|.:.:| 
Mouse    31 CPSV---------CRCDA-----------GFIYCNDRSLTSIPVGIPEDATTL----YLQNNQI- 70

  Fly   196 DNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIK 260
            :||.:      ..::|.:.|         :|.:.|..|:|...|.|   ....::.|.|..|.|:
Mouse    71 NNVGI------PSDLKNLLK---------VQRIYLYHNSLDEFPTN---LPKYVKELHLQENNIR 117

  Fly   261 ALGTADFVGLTSLVYLE---LSNNQISSISQRTFVNLRKLEVLKLGGNRLGDYAQSLRSLSQCLS 322
               |..:..|:.:.|||   |.:|.:|::|            ::.|..|..:|            
Mouse   118 ---TITYDSLSKIPYLEELHLDDNSVSAVS------------IEEGAFRDSNY------------ 155

  Fly   323 LRQLDLQANNLNGPLSEQTLPG--MRNLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQID-- 383
            ||.|.|..|:|:      |:||  .|.:|.|.|:.|.|.:|.:.:|...:.|..|.|..|.::  
Mouse   156 LRLLFLSRNHLS------TIPGGLPRTIEELRLDDNRISTISSPSLHGLTSLKRLVLDGNLLNNH 214

  Fly   384 VLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPLPSLRELR 448
            .|.|..||.|..|..|.|..|.:.| :..:|...| |..|.|..|.:..:..:..:.|..|..|.
Mouse   215 GLGDKVFFNLVNLTELSLVRNSLTA-APVNLPGTS-LRKLYLQDNHINRVPPNAFSYLRQLYRLD 277

  Fly   449 LAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRPFAEWLQESQLHSSL-SASCVTPPRLEG 512
            ::.|::|.:.:...|....:..|.::.||..|.|.::...:|||...:..:: ...|..|.::.|
Mouse   278 MSNNNLSNLPQGIFDDLDNITQLILRNNPWYCGCKMKWVRDWLQSLPVKVNVRGLMCQAPEKVRG 342

  Fly   513 APLLQVPVETLSCDMDNVEKDNANIMQHLETLAKPNQTSP--------------------IKDL- 556
            ..:..:..|...|      ||:..:.....|.|.||...|                    |||. 
Mouse   343 MAIKDLSAELFDC------KDSGIVSTIQITTAIPNTAYPAQGQWPAPVTKQPDIKNPKLIKDQR 401

  Fly   557 -----SEEIILHELHFSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHINEILIDNSPI--HCESK 614
                 |.:.||..:...|...:.::|.|.|.....           .::.:.:.:||.  .....
Mouse   402 TTGSPSRKTILITVKSVTPDTIHISWRLALPMTAL-----------RLSWLKLGHSPAFGSITET 455

  Fly   615 VVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQ-------EQKPDSELNIGCSNITRLERSSPGAV 672
            :|.|:.:..::    ::||....||.|:|.::       ::.|     :.....|...|......
Mouse   456 IVTGERSEYLV----TALEPESPYRVCMVPMETSNLYLFDETP-----VCIETQTAPLRMYNPTT 511

  Fly   673 PVSRQYQRRPYYNAN 687
            .::|:.::.||.|.|
Mouse   512 TLNREQEKEPYKNPN 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 41/186 (22%)
leucine-rich repeat 179..199 CDD:275378 4/19 (21%)
leucine-rich repeat 200..223 CDD:275380 2/22 (9%)
leucine-rich repeat 225..248 CDD:275380 6/22 (27%)
LRR_8 249..307 CDD:290566 14/60 (23%)
leucine-rich repeat 249..272 CDD:275380 6/22 (27%)
LRR_RI <270..479 CDD:238064 57/215 (27%)
leucine-rich repeat 273..296 CDD:275380 7/25 (28%)
leucine-rich repeat 297..322 CDD:275380 3/24 (13%)
LRR_8 322..382 CDD:290566 21/61 (34%)
leucine-rich repeat 323..347 CDD:275380 9/25 (36%)
leucine-rich repeat 348..371 CDD:275380 7/22 (32%)
LRR_8 370..428 CDD:290566 19/59 (32%)
leucine-rich repeat 372..395 CDD:275380 9/24 (38%)
leucine-rich repeat 396..419 CDD:275380 6/22 (27%)
LRR_8 418..478 CDD:290566 13/59 (22%)
leucine-rich repeat 420..443 CDD:275380 5/22 (23%)
leucine-rich repeat 444..467 CDD:275380 5/22 (23%)
LRRCT 476..526 CDD:214507 11/50 (22%)
Flrt3NP_001165631.1 LRRNT 31..61 CDD:214470 12/49 (24%)
Interaction with ADGRL3. /evidence=ECO:0000250|UniProtKB:Q9NZU0 38..67 10/43 (23%)
LRR 1. /evidence=ECO:0000255 58..82 6/34 (18%)
LRR_4 61..100 CDD:289563 11/58 (19%)
leucine-rich repeat 61..84 CDD:275378 6/33 (18%)
LRR 2. /evidence=ECO:0000255 83..105 7/33 (21%)
leucine-rich repeat 85..104 CDD:275380 6/21 (29%)
LRR_8 106..166 CDD:290566 21/86 (24%)
leucine-rich repeat 106..129 CDD:275380 6/25 (24%)
LRR_RI 107..327 CDD:238064 67/254 (26%)
LRR 3. /evidence=ECO:0000255 107..126 6/21 (29%)
LRR 4. /evidence=ECO:0000255 127..152 8/36 (22%)
leucine-rich repeat 130..155 CDD:275380 8/36 (22%)
LRR 5. /evidence=ECO:0000255 153..176 10/40 (25%)
leucine-rich repeat 156..176 CDD:275380 9/25 (36%)
LRR_8 175..237 CDD:290566 21/61 (34%)
leucine-rich repeat 177..200 CDD:275380 7/22 (32%)
LRR 6. /evidence=ECO:0000255 178..197 7/18 (39%)
LRR 7. /evidence=ECO:0000255 198..223 7/24 (29%)
leucine-rich repeat 201..226 CDD:275380 9/24 (38%)
LRR 8. /evidence=ECO:0000255 224..246 7/22 (32%)
leucine-rich repeat 227..248 CDD:275380 6/21 (29%)
LRR_8 247..306 CDD:290566 12/59 (20%)
LRR 9. /evidence=ECO:0000255 247..269 5/22 (23%)
leucine-rich repeat 249..272 CDD:275380 5/22 (23%)
LRR 10. /evidence=ECO:0000255 270..293 5/22 (23%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
LRRCT 305..356 CDD:214507 12/56 (21%)
fn3 413..478 CDD:278470 12/79 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 629..649
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
10.960

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