DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrt and flrt3

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001243575.1 Gene:flrt3 / 558864 ZFINID:ZDB-GENE-030131-1988 Length:649 Species:Danio rerio


Alignment Length:590 Identity:132/590 - (22%)
Similarity:222/590 - (37%) Gaps:143/590 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 GMML-LADRLRTSPYSIS-------LLDCSLRNVTFL-----SDAKIFDNVSLHGLVISSGEIKR 212
            |::| ||:.|.||....|       .:.|:.|::|.:     .||.:        |.:.:..||.
Zfish    16 GLLLGLANPLMTSASCPSQCRCDGTFIYCNDRDLTSIPSGIPEDATV--------LFLQNNRIKS 72

  Fly   213 VHKSAFLGIRGPLQALG------LPGNALMSVPWNALSTLSALERLDLANNKIKALGTADFVGLT 271
            .      ||...|:.|.      |..|.|...|.|.  .|:..| |.|..|.|:.:..|....:.
Zfish    73 A------GIPTDLRRLNGVEKIYLYCNNLDEFPTNL--PLNVKE-LHLQENNIRTITHASLAQIP 128

  Fly   272 SLVYLELSNNQIS--SISQRTFVNLRKLEVLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLN 334
            .:..|.|.:|.:|  ||.:..|.:...|.:|.|..|.|......|.     :::.:|....|.::
Zfish   129 FIEELHLDDNSVSAVSIEEGAFRDSNHLRLLFLSRNHLSTIPSGLP-----MTIEELRFDDNRIS 188

  Fly   335 GPLSEQTLPGMRNLESLNLNRNLI--KSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALD 397
            . :||.:|..:.||:.|.|:.||:  :.|...||.|...|..|||..|              :|.
Zfish   189 S-ISEASLQDLINLKRLVLDGNLLNNRGIGEMALVNLVNLTELSLVRN--------------SLT 238

  Fly   398 SLDLSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPLPSLRELRLAGNDISIVARNAM 462
            |...:..|            |.|..|:|..|.:..:.....|.|..|..|.|:||::|.:.....
Zfish   239 SPPANLPG------------SSLEKLNLQDNHINHVPPGAFAFLRQLYRLDLSGNNLSSLPMGVF 291

  Fly   463 DGARELESLQMQENPLSCDCSIRPFAEWLQESQLHSSLSA---SCVTPPRLEGAPLLQVPVETLS 524
            :....|..|.::.||..|:|.::...:||:  .|.|.::.   .|..|.:::|..:..:..|...
Zfish   292 EDLDNLTQLLLRNNPWHCNCRMKWVRDWLR--TLPSKVNVRGFMCQGPDKVKGMAIKDLSTELFG 354

  Fly   525 CDMDNVEKDNANIMQHLETLAKPNQTSPIK----------------DL----------SEEIILH 563
            |       .:..|....||....|...|.:                ||          |.:||..
Zfish   355 C-------SDTEIPTTYETSTVSNTLPPSRPQWPSYVTKRPVVKGPDLGRNYRSTTPSSRKIITI 412

  Fly   564 ELHFSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHINEILIDNSPI--HCESKVVNGQNTVSVIV 626
            .:..|:...:.::|.::......           .::.:.:.:||.  .....:|.|:.|..:: 
Zfish   413 SVKSSSAETVHISWRVSQPMTAL-----------RLSWLKLGHSPAFGSITETIVQGERTEYLL- 465

  Fly   627 PDSSSLEIGESYRFCLVMIQEQKPDSELNIGCSNIT---------RLERSSPGAVPVSRQYQRRP 682
               ::||...|||.|:|      |....||..|:.|         .|:..:| ...::|:.::.|
Zfish   466 ---TALEPESSYRICMV------PMETSNIYLSDETPVCIETETGSLKAYNP-TTTLNREQEKEP 520

  Fly   683 YYNAN 687
            |.|:|
Zfish   521 YKNSN 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 47/193 (24%)
leucine-rich repeat 179..199 CDD:275378 5/24 (21%)
leucine-rich repeat 200..223 CDD:275380 5/22 (23%)
leucine-rich repeat 225..248 CDD:275380 8/28 (29%)
LRR_8 249..307 CDD:290566 17/59 (29%)
leucine-rich repeat 249..272 CDD:275380 6/22 (27%)
LRR_RI <270..479 CDD:238064 53/212 (25%)
leucine-rich repeat 273..296 CDD:275380 7/24 (29%)
leucine-rich repeat 297..322 CDD:275380 6/24 (25%)
LRR_8 322..382 CDD:290566 20/61 (33%)
leucine-rich repeat 323..347 CDD:275380 5/23 (22%)
leucine-rich repeat 348..371 CDD:275380 9/24 (38%)
LRR_8 370..428 CDD:290566 12/57 (21%)
leucine-rich repeat 372..395 CDD:275380 5/22 (23%)
leucine-rich repeat 396..419 CDD:275380 3/22 (14%)
LRR_8 418..478 CDD:290566 16/59 (27%)
leucine-rich repeat 420..443 CDD:275380 6/22 (27%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
LRRCT 476..526 CDD:214507 12/52 (23%)
flrt3NP_001243575.1 LRRNT 31..61 CDD:214470 5/29 (17%)
leucine-rich repeat 61..84 CDD:275378 7/36 (19%)
leucine-rich repeat 85..105 CDD:275380 5/21 (24%)
LRR_RI 104..327 CDD:238064 66/257 (26%)
leucine-rich repeat 106..129 CDD:275380 6/23 (26%)
leucine-rich repeat 130..155 CDD:275380 7/24 (29%)
LRR_8 131..211 CDD:290566 23/85 (27%)
leucine-rich repeat 156..176 CDD:275380 6/24 (25%)
leucine-rich repeat 177..200 CDD:275380 5/23 (22%)
LRR_8 178..237 CDD:290566 20/73 (27%)
leucine-rich repeat 201..226 CDD:275380 9/24 (38%)
leucine-rich repeat 227..248 CDD:275380 8/46 (17%)
LRR_8 247..306 CDD:290566 15/58 (26%)
leucine-rich repeat 249..272 CDD:275380 6/22 (27%)
leucine-rich repeat 273..296 CDD:275380 6/22 (27%)
LRRCT 305..356 CDD:214507 13/59 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
10.960

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