DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrt and LRRN3

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001093128.1 Gene:LRRN3 / 54674 HGNCID:17200 Length:708 Species:Homo sapiens


Alignment Length:763 Identity:168/763 - (22%)
Similarity:288/763 - (37%) Gaps:200/763 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 VSSLPLPVDDALMEWKCPNITGTRNAELECGCDL------------PHTLRCNIDLHGMMLLADR 168
            :::|...||..:   .||.:         |.|::            ..|:.|| || |::....|
Human    16 ITTLVQAVDKKV---DCPRL---------CTCEIRPWFTPRSIYMEASTVDCN-DL-GLLTFPAR 66

  Fly   169 LRTSPYSISLLDCSLRNVTFLSDAKIFDNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALG--LP 231
            |   |.:..:|.....|:..:..:..|. |:|.||.:|...:..|..   :.::...|.|.  |.
Human    67 L---PANTQILLLQTNNIAKIEYSTDFP-VNLTGLDLSQNNLSSVTN---INVKKMPQLLSVYLE 124

  Fly   232 GNALMSVPWNALSTLSALERLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRK 296
            .|.|..:|...||.||.|:.|.:.:|.:..:....|:||.:|:.|.|::|::..|:.:.|..|..
Human   125 ENKLTELPEKCLSELSNLQELYINHNLLSTISPGAFIGLHNLLRLHLNSNRLQMINSKWFDALPN 189

  Fly   297 LEVLKLGGN---RLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLI 358
            ||:|.:|.|   |:.|     .:....::||.|.:...||. .:.:..|.|:.||||::...|.:
Human   190 LEILMIGENPIIRIKD-----MNFKPLINLRSLVIAGINLT-EIPDNALVGLENLESISFYDNRL 248

  Fly   359 KSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNG---IVAISSASLQHLSRL 420
            ..:.:.||.....|..|.|..|.|:.::...|..:  |...:|..|.   :::|.|.::.:|..|
Human   249 IKVPHVALQKVVNLKFLDLNKNPINRIRRGDFSNM--LHLKELGINNMPELISIDSLAVDNLPDL 311

  Fly   421 TVLDLTHN-FLRALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSI 484
            ..::.|:| .|..:..:....||.|..|.|..|.:|.:....::....|:.:.:..||:.|||.|
Human   312 RKIEATNNPRLSYIHPNAFFRLPKLESLMLNSNALSALYHGTIESLPNLKEISIHSNPIRCDCVI 376

  Fly   485 RPFAEWLQESQLHSSL----SASCVTPPRLEGAPLLQV----------PV---ETLSCDMDNVEK 532
            |    |:..::.:...    |..||.||..:|..:.||          |:   |:...:: |||.
Human   377 R----WMNMNKTNIRFMEPDSLFCVDPPEFQGQNVRQVHFRDMMEICLPLIAPESFPSNL-NVEA 436

  Fly   533 DNANIMQHLETLAKPNQTSPIKDLSEEIILHELHFSTDYGLILTWLLNLSKKDYMCDAIFVYKEE 597
             .:.:..|....|:|..              |:::.|..|                       ::
Human   437 -GSYVSFHCRATAEPQP--------------EIYWITPSG-----------------------QK 463

  Fly   598 HINEILIDNSPIHCESKV-VNGQNTVSVIVPDSSSLE-------IGESYRFCLVMIQEQKPDSEL 654
            .:...|.|...:|.|..: :||      :.|....|.       :|...:..::.:....|..  
Human   464 LLPNTLTDKFYVHSEGTLDING------VTPKEGGLYTCIATNLVGADLKSVMIKVDGSFPQD-- 520

  Fly   655 NIGCSNITRLERSSPGAVPVS-------------------------RQYQRRP----YYNANELK 690
            |.|..|| ::......:|.||                         .|..|.|    .||...|.
Human   521 NNGSLNI-KIRDIQANSVLVSWKASSKILKSSVKWTAFVKTENSHAAQSARIPSDVKVYNLTHLN 584

  Fly   691 P----EVVHDAGEDYQVNQRRFNSVV--GSQPQQTQ-----QSTLL------------------- 725
            |    ::..|....||.|:::..:|.  |..|.|.:     .:||:                   
Human   585 PSTEYKICIDIPTIYQKNRKKCVNVTTKGLHPDQKEYEKNNTTTLMACLGGLLGIIGVICLISCL 649

  Fly   726 ---------HSYTVIDSLNKSFLPGLGLGVLVTSVLVLIWGATRIRQT 764
                     ||| |.:.|.|   |...||.|... |:.:|.|.:.:.|
Human   650 SPEMNCDGGHSY-VRNYLQK---PTFALGELYPP-LINLWEAGKEKST 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 52/187 (28%)
leucine-rich repeat 179..199 CDD:275378 3/19 (16%)
leucine-rich repeat 200..223 CDD:275380 5/22 (23%)
leucine-rich repeat 225..248 CDD:275380 9/24 (38%)
LRR_8 249..307 CDD:290566 18/60 (30%)
leucine-rich repeat 249..272 CDD:275380 6/22 (27%)
LRR_RI <270..479 CDD:238064 55/215 (26%)
leucine-rich repeat 273..296 CDD:275380 7/22 (32%)
leucine-rich repeat 297..322 CDD:275380 7/27 (26%)
LRR_8 322..382 CDD:290566 18/59 (31%)
leucine-rich repeat 323..347 CDD:275380 7/23 (30%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
LRR_8 370..428 CDD:290566 14/60 (23%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..419 CDD:275380 6/25 (24%)
LRR_8 418..478 CDD:290566 13/60 (22%)
leucine-rich repeat 420..443 CDD:275380 5/23 (22%)
leucine-rich repeat 444..467 CDD:275380 5/22 (23%)
LRRCT 476..526 CDD:214507 18/66 (27%)
LRRN3NP_001093128.1 LRRNT 28..72 CDD:214470 13/57 (23%)
LRR 1 70..91 2/20 (10%)
leucine-rich repeat 72..93 CDD:275380 3/21 (14%)
LRR <75..355 CDD:227223 75/291 (26%)
LRR 2 93..114 5/23 (22%)
leucine-rich repeat 94..117 CDD:275380 5/25 (20%)
LRR 3 117..138 7/20 (35%)
leucine-rich repeat 118..141 CDD:275380 8/22 (36%)
LRR 4 141..162 4/20 (20%)
leucine-rich repeat 142..165 CDD:275380 6/22 (27%)
LRR 5 165..186 6/20 (30%)
leucine-rich repeat 166..189 CDD:275380 7/22 (32%)
LRR 6 189..210 7/25 (28%)
leucine-rich repeat 190..213 CDD:275380 7/27 (26%)
LRR 7 213..234 6/21 (29%)
leucine-rich repeat 214..237 CDD:275380 7/23 (30%)
LRR 8 237..258 7/20 (35%)
leucine-rich repeat 238..261 CDD:275380 6/22 (27%)
LRR 9 261..282 6/20 (30%)
leucine-rich repeat 262..285 CDD:275380 6/24 (25%)
LRR 10 285..304 4/18 (22%)
leucine-rich repeat 286..310 CDD:275380 5/23 (22%)
LRR 11 310..332 4/21 (19%)
leucine-rich repeat 311..333 CDD:275380 4/21 (19%)
LRR 12 335..358 5/22 (23%)
leucine-rich repeat 336..359 CDD:275380 5/22 (23%)
PCC 341..>442 CDD:188093 25/106 (24%)
Ig 437..513 CDD:325142 15/118 (13%)
fn3 526..593 CDD:306538 12/67 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.