DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrt and CG7896

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster


Alignment Length:952 Identity:189/952 - (19%)
Similarity:326/952 - (34%) Gaps:363/952 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 EQVSSLPL------PVDDALME------------WKCPNITGTRNAELECGCDLPHTLRCNIDLH 160
            |.|.||.|      |:..||.:            .....|:|...|.|:   ||.|     |.|:
  Fly   522 ENVQSLNLSGNHLTPLTGALFKPLDRLQVIDLSGCNIRQISGDLLAGLQ---DLKH-----IYLN 578

  Fly   161 GMML--LADRLRTSPYSISLLDC------SLRNVTFLSDAKIFDNVSLHG--------------- 202
            ...|  |.|....:.::||.:|.      |:|:..|::..|: ..:.|||               
  Fly   579 DNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKL-QKLDLHGNQLSAFKGEYFNTGT 642

  Fly   203 ----LVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIKALG 263
                |.||..::..:..|:| .|...|:.:....|.....|...:|||..||.:||::|::|.:.
  Fly   643 GIEELDISDNQLSYLFPSSF-RIHPRLREIRAANNKFSFFPAELISTLQYLEHIDLSHNQLKTIE 706

  Fly   264 TADFVGL------------------------TSLVYLELSNNQISSISQRTFVNLRKLEVLKLGG 304
            ..||..|                        |.|..|:|::|.:..|.:|||..|.:||.|.|.|
  Fly   707 ELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQILDLAHNNLDRIGERTFEGLVRLEQLNLEG 771

  Fly   305 NRLGDYA---------QSLRSL---------------------------------------SQCL 321
            |||.:.:         |.|.::                                       |..:
  Fly   772 NRLSELSDGVFERTKLQMLENINLAHNRFEYAPLNALQRQFFFVSSVDLSHNKIKELPGDDSIMV 836

  Fly   322 SLRQLDLQANN---------LNGPLSEQTL----PGMRNLE--------SLNLNRNLIKSIQNKA 365
            :::::||..|.         ||.|.:.:.|    .|:.|||        .|||:.|.:|:::.:.
  Fly   837 NIKRIDLSFNPLSSKAVHNVLNEPKTVRELSLAGTGIENLELLETPFLQFLNLSHNKLKNVKPEV 901

  Fly   366 LANFSRLVSLSLRHNQIDVLQD--HAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTH- 427
            ....:.|.:|.|..||::.|:|  .|:..|..|.|||:|.|....:|.::...|..|..|.|:| 
  Fly   902 FQRVTLLETLDLSSNQLESLEDLSMAWPQLQVLQSLDVSNNSFEIVSQSNFGKLEMLRSLRLSHL 966

  Fly   428 --------NFLRALT-----------------------------------------SDLIAPL-- 441
                    |..:.|.                                         |:.|.||  
  Fly   967 PQCTRIEKNAFKQLPNLVSLEAYDLPLLGYLDLQGILELLPGLEVLDIEVKDSSIGSEQIQPLKH 1031

  Fly   442 PSLRELRLAG----------------NDISIVARNA----------------------MDGAR-- 466
            |.|:.|.:.|                ||:|:..||.                      ::|::  
  Fly  1032 PRLKSLGIRGDRLKSISSGTLAGLKSNDLSVQLRNTSLNALPPALLFPVPRSSHLSLNVEGSKIT 1096

  Fly   467 --------ELE----SLQMQ---ENPLSCDCSIRPFAEWLQESQLHSSLSASCVTPPRLEGAPLL 516
                    .||    |||:|   .||:.|||:.|....||..|.:.   ..:|.:|..|....|:
  Fly  1097 VLVPQFLNALEDRRASLQLQGLASNPIVCDCNARALRRWLPSSGMP---DVTCASPAYLLNRKLI 1158

  Fly   517 QVPVETLSCD----MDNVEKDNANIMQHLETLAKPNQTSPIKDLSEEIILHELHFSTDYGLILTW 577
            :|..:.|:||    ..:..:..|::...|:|             |.:::...  .||....::.|
  Fly  1159 EVGDDELTCDARRMTSSTSRPTASVPHLLKT-------------SSQLVTRS--SSTTEEPLIIW 1208

  Fly   578 LLNLSKKDYMCDAIFVYKEEHINEILIDNSPI-HCESKVVNGQNTVSVIVPDSSSLEIGESYRF- 640
            .|..::...:             :.:...:|: ..:|.:::..:|:.:.:       :|....| 
  Fly  1209 SLEPTQPPSL-------------KKMKTKAPLMKAQSPIISNDDTLIIGI-------VGGVVAFI 1253

  Fly   641 -------CLVMIQEQKPDSELN-----------IGCSNITRLERSSPGAVPVSRQYQRRPYYNAN 687
                   |::.::....:.:.|           :|..|.....::..||.    .|...||:...
  Fly  1254 AILIIIICIIRLRMSNAEYQQNATMIGIPAGMQMGAHNAAYNYKNGAGAA----LYAVPPYHATL 1314

  Fly   688 ELKPEVVHDAGEDYQVNQRRFNSVVGSQPQQTQQSTLLHSYTVIDSLNKSFLPGLGLGVLVTSVL 752
            ..|...:|.:.::....|::       |.||.|.:....:|:.:..:  |:.             
  Fly  1315 PHKAASIHQSSQNLSQRQQQ-------QQQQQQVAAAAAAYSTMSRM--SYF------------- 1357

  Fly   753 VLIWGATRIRQTGGSSGGGGRNGDSIDSNSSSMHNNNNNSRP 794
                           ||.||.|||..:|.:   |.:.:..:|
  Fly  1358 ---------------SGAGGGNGDGAESLT---HQHPHQHQP 1381

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 61/290 (21%)
leucine-rich repeat 179..199 CDD:275378 5/25 (20%)
leucine-rich repeat 200..223 CDD:275380 9/41 (22%)
leucine-rich repeat 225..248 CDD:275380 6/22 (27%)
LRR_8 249..307 CDD:290566 25/81 (31%)
leucine-rich repeat 249..272 CDD:275380 9/46 (20%)
LRR_RI <270..479 CDD:238064 83/410 (20%)
leucine-rich repeat 273..296 CDD:275380 9/22 (41%)
leucine-rich repeat 297..322 CDD:275380 11/72 (15%)
LRR_8 322..382 CDD:290566 20/80 (25%)
leucine-rich repeat 323..347 CDD:275380 8/36 (22%)
leucine-rich repeat 348..371 CDD:275380 7/30 (23%)
LRR_8 370..428 CDD:290566 21/68 (31%)
leucine-rich repeat 372..395 CDD:275380 9/24 (38%)
leucine-rich repeat 396..419 CDD:275380 8/22 (36%)
LRR_8 418..478 CDD:290566 27/166 (16%)
leucine-rich repeat 420..443 CDD:275380 10/74 (14%)
leucine-rich repeat 444..467 CDD:275380 9/70 (13%)
LRRCT 476..526 CDD:214507 15/49 (31%)
CG7896NP_651754.1 LRR_8 109..172 CDD:290566
leucine-rich repeat 109..132 CDD:275380
LRR_RI <132..338 CDD:238064
leucine-rich repeat 133..161 CDD:275380
LRR_8 160..220 CDD:290566
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
LRR_8 232..290 CDD:290566
leucine-rich repeat 234..257 CDD:275380
leucine-rich repeat 258..281 CDD:275380
LRR_RI 273..535 CDD:238064 5/12 (42%)
LRR_8 281..338 CDD:290566
leucine-rich repeat 282..329 CDD:275380
LRR_8 328..388 CDD:290566
leucine-rich repeat 330..353 CDD:275380
leucine-rich repeat 354..377 CDD:275380
leucine-rich repeat 378..401 CDD:275380
leucine-rich repeat 402..425 CDD:275380
leucine-rich repeat 428..451 CDD:275380
LRR_8 429..487 CDD:290566
leucine-rich repeat 452..473 CDD:275380
leucine-rich repeat 477..497 CDD:275378
LRR_8 498..558 CDD:290566 8/35 (23%)