DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and rdo

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster


Alignment Length:718 Identity:156/718 - (21%)
Similarity:249/718 - (34%) Gaps:221/718 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 KCPNITGTRNAELECGCDLPHTLRCNIDLHGMMLLADRLRT--SPYSISLLDCSL------RNVT 187
            |||.         ||.|.:.     ::|.:..:.....|.:  ||..:. :|..:      ||..
  Fly    23 KCPT---------ECQCSMD-----DLDRYQAICTKGGLNSLLSPNELD-VDVKVIIIRGPRNSI 72

  Fly   188 FLSDAKIFDNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERL 252
            .:..| :...:.|..|.|:...:..:...:|.|:: .|:.|.|..|.:.::..|.......|..|
  Fly    73 TIGPA-LRQFMKLEILRITDSNLPAIGAESFWGLK-YLRILDLSKNNITNITENNFRGQDNLLEL 135

  Fly   253 DLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLGDYAQSL-RS 316
            ||:.||:..:.::.|..||.|..|.|::|.|..:.||.|..|.:|:.|.|.||.|.|....: |.
  Fly   136 DLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRD 200

  Fly   317 LSQCLSLRQLDLQANNLNGPLSEQTLPGMRN----LESLNLNRNLIKSIQNKALANFSRLVSLSL 377
            :.:...|:..:.|...:|        |.|.|    |..|:|.||..|.:......:..||..:.|
  Fly   201 VPELKVLKCRNCQLKKIN--------PQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLL 257

  Fly   378 RHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNFL--------RALT 434
            ..||:.|:.|..|....:|:.||||||.:..:.:.|...|:.||.|||::|.|        |:|:
  Fly   258 DGNQLSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLS 322

  Fly   435 S--------------------------------------------------------DLIAPLPS 443
            :                                                        .|:.|...
  Fly   323 NLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQ 387

  Fly   444 LRELRLAGNDISIVARNAMDGARELE------------------------SLQMQENPLSCD-CS 483
            ||.|.::||.::..|...:|..||||                        ::::..|||.|| |.
  Fly   388 LRYLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECH 452

  Fly   484 IRPFAEWLQESQLHSSLSASCVTPPRLEGAPLLQVPVETL-SC------DMDNVEKDNANIMQH- 540
            :......:::.|........|..|..|.||.:..:.:..| :|      :..|....:.|.::| 
  Fly   453 MGKLINVVRQLQWKWDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHG 517

  Fly   541 -LETLAKPNQTSPIKDLSEEIILHELHFSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHIN---- 600
             |.|||               ||..:.|.....:||:.:...||.    .|.:..:|:|:|    
  Fly   518 GLNTLA---------------ILGGIIFVLIAVIILSLVACFSKN----RARYYTREDHLNGSES 563

  Fly   601 -------------------------EILIDNSPIHCESKVVNGQ---------NTVSVIVPDSSS 631
                                     .:.:..||........|||         :|....:.|...
  Fly   564 KCLEKNLEATTITTLGNGSSPTTTTTLTLATSPAAPNGPKTNGQGLSLSPANGSTPVHGISDDKG 628

  Fly   632 LEIGESY----RFCLVMIQEQKPDSELNIGCSNITRLERSSPGAVPVSRQYQRRPYYNANELKPE 692
            .||..::    |.|  .|.|..|                 ||...|     |:.|:.|...|...
  Fly   629 KEINFTFPVDDRVC--TIDELMP-----------------SPPPPP-----QQHPHPNMGSLMYS 669

  Fly   693 VVH 695
            |.|
  Fly   670 VSH 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 46/191 (24%)
leucine-rich repeat 179..199 CDD:275378 4/25 (16%)
leucine-rich repeat 200..223 CDD:275380 5/22 (23%)
leucine-rich repeat 225..248 CDD:275380 5/22 (23%)
LRR_8 249..307 CDD:290566 23/57 (40%)
leucine-rich repeat 249..272 CDD:275380 8/22 (36%)
LRR_RI <270..479 CDD:238064 72/301 (24%)
leucine-rich repeat 273..296 CDD:275380 9/22 (41%)
leucine-rich repeat 297..322 CDD:275380 8/25 (32%)
LRR_8 322..382 CDD:290566 16/63 (25%)
leucine-rich repeat 323..347 CDD:275380 5/23 (22%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
LRR_8 370..428 CDD:290566 22/57 (39%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..419 CDD:275380 9/22 (41%)
LRR_8 418..478 CDD:290566 23/147 (16%)
leucine-rich repeat 420..443 CDD:275380 11/86 (13%)
leucine-rich repeat 444..467 CDD:275380 7/22 (32%)
LRRCT 476..526 CDD:214507 14/57 (25%)
rdoNP_001286024.1 leucine-rich repeat 84..107 CDD:275380 5/23 (22%)
leucine-rich repeat 108..131 CDD:275380 5/22 (23%)
LRR_8 131..190 CDD:290566 23/58 (40%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
LRR_RI 151..422 CDD:238064 70/278 (25%)
leucine-rich repeat 156..179 CDD:275380 9/22 (41%)
LRR_8 178..262 CDD:290566 24/91 (26%)
leucine-rich repeat 180..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..251 CDD:275380 12/54 (22%)
leucine-rich repeat 252..275 CDD:275380 7/22 (32%)
LRR_8 274..334 CDD:290566 18/59 (31%)
leucine-rich repeat 276..299 CDD:275380 9/22 (41%)
LRR_4 298..342 CDD:289563 9/43 (21%)
leucine-rich repeat 300..323 CDD:275380 9/22 (41%)
leucine-rich repeat 388..411 CDD:275380 7/22 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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