DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and CG18480

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster


Alignment Length:517 Identity:125/517 - (24%)
Similarity:184/517 - (35%) Gaps:138/517 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 QSLRSLSQ----CLSLRQLDLQANNLNGPLSEQTLPGMR-----NLESLNLNRNLIKSIQNKALA 367
            |..||.:|    |.::...||.|.......|.:.|....     .:|.|:|:.|.|.:|.:.:..
  Fly    31 QVCRSKTQSQMFCPTVCHCDLHAQRNRAVCSAKRLISANIEIPTTVELLDLSYNDITTIDDDSFK 95

  Fly   368 NFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAI------SSASLQHLS-------- 418
            ....|::|:|.||.|..|...||..|..|..||||||.:..|      |:..|.||:        
  Fly    96 TTIHLLNLTLAHNAIHTLYGDAFVELTRLRYLDLSYNRLEQIDEHILESNNQLIHLNLEGNKLST 160

  Fly   419 ----------RLTVLDLTHNFLRALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQM 473
                      .|..|:|.::.:..|.:.|::.||.||:|.||.|.:..::.......|.|.||.:
  Fly   161 LGKGPILRSPSLRSLNLRNSQVNQLGTQLLSALPQLRQLDLAQNLLLTLSPGDFHAPRNLASLNV 225

  Fly   474 QENPLSCDCSIRPFAEWL--------------QESQLHSSLSASCVTPPR----------LEGAP 514
            :|||.:||.::...|..|              :|.|.|.. .|..|..|.          ||  |
  Fly   226 EENPFNCDRALAKVATGLRQRGVAIFMSNCMEEEVQDHQD-DAEAVNFPNKNEKFESMEYLE--P 287

  Fly   515 LLQVPVETLSC--DMDNVEKDNANIMQHLETLAKPNQTSPIKDLSE--------------EIILH 563
            ..:.|...||.  |:|:.|:.|::        ....|.|.:.|:.|              |.:.|
  Fly   288 STRGPQSVLSVWRDLDSSEEQNSS--------QDDEQMSSLSDVCEGSREKLCLRYRICLERVSH 344

  Fly   564 EL---------------HFSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHINEILIDNSPIHCES 613
            ||               |...:..|.|.:::..:..  :|..||:     |...|...|......
  Fly   345 ELLAGGNSQLEDEIIRTHTYDEDDLKLAFVVGGATG--VCMVIFI-----ITFALCLKSCCEMRK 402

  Fly   614 KVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNIGCSNITRLERSSPGAVPVSRQY 678
            |..|.:....|..|.:.|.:       .|..|....|....|...||..|...:...||      
  Fly   403 KKSNPEVATGVSAPLNPSQD-------SLPTIHTWSPQRTRNPRRSNPQRPRSTQSHAV------ 454

  Fly   679 QRRPYYNANELKPEVVHDAGEDYQVNQRRFNSVVGSQPQQT-QQSTLLHSYTVIDSLNKSFL 739
            .|:||              |.......|.|.....||..:| .|:|.    |:|..|::|.|
  Fly   455 VRQPY--------------GPQDNFVSRLFGRPARSQYYRTINQNTA----TLIRRLSRSNL 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 8/25 (32%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380
LRR_8 249..307 CDD:290566
leucine-rich repeat 249..272 CDD:275380
LRR_RI <270..479 CDD:238064 58/199 (29%)
leucine-rich repeat 273..296 CDD:275380
leucine-rich repeat 297..322 CDD:275380 5/13 (38%)
LRR_8 322..382 CDD:290566 16/64 (25%)
leucine-rich repeat 323..347 CDD:275380 5/28 (18%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
LRR_8 370..428 CDD:290566 25/81 (31%)
leucine-rich repeat 372..395 CDD:275380 10/22 (45%)
leucine-rich repeat 396..419 CDD:275380 12/46 (26%)
LRR_8 418..478 CDD:290566 19/77 (25%)
leucine-rich repeat 420..443 CDD:275380 6/22 (27%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
LRRCT 476..526 CDD:214507 18/75 (24%)
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 23/59 (39%)
LRR_RI <76..230 CDD:238064 47/153 (31%)
leucine-rich repeat 76..99 CDD:275380 6/22 (27%)
leucine-rich repeat 100..123 CDD:275380 10/22 (45%)
LRR_8 122..182 CDD:290566 15/59 (25%)
leucine-rich repeat 124..147 CDD:275380 9/22 (41%)
leucine-rich repeat 148..171 CDD:275380 3/22 (14%)
LRR_8 170..230 CDD:290566 19/59 (32%)
leucine-rich repeat 172..195 CDD:275380 6/22 (27%)
leucine-rich repeat 196..219 CDD:275380 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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