DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and kek3

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001162986.1 Gene:kek3 / 34912 FlyBaseID:FBgn0028370 Length:1021 Species:Drosophila melanogaster


Alignment Length:269 Identity:71/269 - (26%)
Similarity:115/269 - (42%) Gaps:29/269 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 KLEVLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPG-------MRNLESLNL 353
            |..||.|..| |....|.|.:.:|.     |||..|.:      |.:|.       :.||:.:.|
  Fly    91 KESVLCLNAN-LTHIPQPLDAGTQL-----LDLSGNEI------QLIPDDSFATAQLLNLQKVYL 143

  Fly   354 NRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLS 418
            .|..::.|:..|......||.|.|..|.:..:...|.:.:..|..|.||.|.|:.:...:..|:.
  Fly   144 ARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSLALYHVSELRELRLSGNPILRVPDDAFGHVP 208

  Fly   419 RLTVLDLTHNFLRALTSDLIAPL-PSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDC 482
            :|..|:|:...|..:.....|.| .||..|:|.||.:|.|....:.....|..|::..|..:|.|
  Fly   209 QLVKLELSDCRLSHIAVRAFAGLESSLEWLKLDGNRLSEVRSGTITSLASLHGLELARNTWNCSC 273

  Fly   483 SIRPFAEWLQESQLHSSLSASCVTPPRLEGAPLLQVPVETLSC---------DMDNVEKDNANIM 538
            |:||...|:.:..:.|.:..:|.:||||.|....::.|:..:|         ....||..|..:.
  Fly   274 SLRPLRAWMLQQNIPSGIPPTCESPPRLSGRAWDKLDVDDFACVPQIVATDTTAHGVEGRNITMS 338

  Fly   539 QHLETLAKP 547
            .::|.:.:|
  Fly   339 CYVEGVPQP 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 13/37 (35%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380
LRR_8 249..307 CDD:290566 5/10 (50%)
leucine-rich repeat 249..272 CDD:275380
LRR_RI <270..479 CDD:238064 51/190 (27%)
leucine-rich repeat 273..296 CDD:275380 71/269 (26%)
leucine-rich repeat 297..322 CDD:275380 8/24 (33%)
LRR_8 322..382 CDD:290566 17/66 (26%)
leucine-rich repeat 323..347 CDD:275380 6/30 (20%)
leucine-rich repeat 348..371 CDD:275380 5/22 (23%)
LRR_8 370..428 CDD:290566 16/57 (28%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..419 CDD:275380 7/22 (32%)
LRR_8 418..478 CDD:290566 17/60 (28%)
leucine-rich repeat 420..443 CDD:275380 6/23 (26%)
leucine-rich repeat 444..467 CDD:275380 7/22 (32%)
LRRCT 476..526 CDD:214507 16/58 (28%)
kek3NP_001162986.1 LRR_RI <110..267 CDD:238064 42/167 (25%)
leucine-rich repeat 112..137 CDD:275380 7/35 (20%)
LRR_8 137..196 CDD:290566 17/58 (29%)
leucine-rich repeat 138..161 CDD:275380 5/22 (23%)
leucine-rich repeat 162..185 CDD:275380 6/22 (27%)
LRR_8 184..245 CDD:290566 19/60 (32%)
leucine-rich repeat 186..209 CDD:275380 7/22 (32%)
leucine-rich repeat 210..234 CDD:275380 6/23 (26%)
leucine-rich repeat 235..258 CDD:275380 7/22 (32%)
LRRCT 267..316 CDD:214507 15/48 (31%)
IG_like 328..428 CDD:214653 5/20 (25%)
Ig 335..425 CDD:143165 2/13 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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