DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and CG16974

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001246018.1 Gene:CG16974 / 34713 FlyBaseID:FBgn0032479 Length:1257 Species:Drosophila melanogaster


Alignment Length:722 Identity:163/722 - (22%)
Similarity:254/722 - (35%) Gaps:238/722 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 AEQVSSLPLPVDDALME--WKCPNITG-------TRN------------AE--LECGCDLPHTLR 154
            |::.:.|.||..::|.|  |:...:..       ||.            ||  |||         
  Fly   162 ADRSNPLKLPQLESLREFSWQSSELKDETLMELFTRQPRSFEYMERLNLAENRLEC--------- 217

  Fly   155 CNIDLHGMMLLADRLRTSPYSIS---LLDCSLRNVTFLSDAKIFDNVSLHGLVISSGEIKRVHKS 216
                ||..:.||.| |.....:|   |.:|||.|:.::..                         
  Fly   218 ----LHWAIPLAVR-RVKVLEMSGNRLSNCSLLNLQYMKQ------------------------- 252

  Fly   217 AFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIKALGTADFVGLTSLVYLELSNN 281
                    ||.|.|..:.|..:|...|..||.|..|:|:.|.:..|....|||...|..|.||.|
  Fly   253 --------LQELHLDRSELTYLPQRFLGELSELRMLNLSQNLLTELPRDIFVGALKLERLYLSGN 309

  Fly   282 QISSISQRTFVNLRKLEVLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMR 346
            ::|.:....|.....|:||.|..|||..:..:.  .::...||||.||.|.|.. :.:.:|..:|
  Fly   310 RLSVLPFMLFQTAADLQVLDLSDNRLLSFPDNF--FARNGQLRQLHLQRNQLKS-IGKHSLYSLR 371

  Fly   347 NLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISS 411
            .|..|:|::|.:..|..||..:...|::|::..|.:.:|....|..|.||..||||.|....:.|
  Fly   372 ELRQLDLSQNSLSVIDRKAFESLDHLLALNVSGNNLTLLSSIIFQSLHALRQLDLSRNQFKQLPS 436

  Fly   412 ASLQH---------------------------------LSRLTVLDLTHNFLRALT---SDLIAP 440
            ...|.                                 |.||..|.:..|  |.||   :.|.|.
  Fly   437 GLFQRQRSLVLLRIDETPIEQFSNWISRYDESLVDPQVLHRLRYLSVQQN--RKLTYLPATLFAN 499

  Fly   441 LPSLRELRLA-----------------------GNDISIVARNAMDGARELESLQMQENPLSCDC 482
            .|::|||.||                       ||.:..:..|..: .|:|..|.:..|...|||
  Fly   500 TPNIRELLLAENGLLQLPTQISGLSRLQRLSVRGNSLGSLPENIKE-LRQLHYLNILGNEYQCDC 563

  Fly   483 SIRPFAEWL-----------QESQLHSSLSASCVTPPRLEGAPLLQVPVETLSCDMDNVEKDNAN 536
            |:.....||           .::|.||:.|.:             |.|::               
  Fly   564 SMYWLTAWLANTSTSLRHQMPQAQNHSNGSTN-------------QTPLD--------------- 600

  Fly   537 IMQHLETLAKPNQTSPIKDLSEEIILHELH-FSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHIN 600
                                |.|.|.|::. ....||.....|..|||.:.....:..:.|..::
  Fly   601 --------------------SYESIDHQIDALKCQYGYRGDMLRVLSKLNCSVPTVVQFSEPKMH 645

  Fly   601 EILIDNSPIHCESKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNIGCSNITRLE 665
            : |:..:.:.|:   ::|..     |||             ::.:..:          :.|.| .
  Fly   646 K-LLSTAKLECQ---ISGSP-----VPD-------------IIWVTPR----------NKILR-H 677

  Fly   666 RSSPGAVPV---SRQYQRRPYYNANELKPEVVHDAGEDYQVNQRRFNSVVGSQPQQTQQSTLL-H 726
            .:.|...|:   |::...:| .:|.||  ..:.|......:|..|.||:||.:....:..:|| |
  Fly   678 HADPDKRPIIIDSKEDAHQP-PSAQEL--AALMDESYIQSLNWTRQNSLVGRRVVLVENGSLLVH 739

  Fly   727 SYTVIDS 733
            :.:.|||
  Fly   740 NISRIDS 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 50/185 (27%)
leucine-rich repeat 179..199 CDD:275378 4/19 (21%)
leucine-rich repeat 200..223 CDD:275380 0/22 (0%)
leucine-rich repeat 225..248 CDD:275380 8/22 (36%)
LRR_8 249..307 CDD:290566 20/57 (35%)
leucine-rich repeat 249..272 CDD:275380 8/22 (36%)
LRR_RI <270..479 CDD:238064 69/267 (26%)
leucine-rich repeat 273..296 CDD:275380 7/22 (32%)
leucine-rich repeat 297..322 CDD:275380 7/24 (29%)
LRR_8 322..382 CDD:290566 20/59 (34%)
leucine-rich repeat 323..347 CDD:275380 9/23 (39%)
leucine-rich repeat 348..371 CDD:275380 7/22 (32%)
LRR_8 370..428 CDD:290566 19/90 (21%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..419 CDD:275380 9/55 (16%)
LRR_8 418..478 CDD:290566 22/85 (26%)
leucine-rich repeat 420..443 CDD:275380 8/25 (32%)
leucine-rich repeat 444..467 CDD:275380 8/45 (18%)
LRRCT 476..526 CDD:214507 13/60 (22%)
CG16974NP_001246018.1 leucine-rich repeat 206..228 CDD:275380 10/35 (29%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_RI <246..433 CDD:238064 62/222 (28%)
LRR_8 251..311 CDD:290566 22/92 (24%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 8/22 (36%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
LRR_8 325..383 CDD:290566 21/60 (35%)
leucine-rich repeat 325..348 CDD:275380 7/24 (29%)
leucine-rich repeat 349..372 CDD:275380 9/23 (39%)
LRR_RI 351..>557 CDD:238064 52/209 (25%)
LRR_8 371..431 CDD:290566 21/59 (36%)
leucine-rich repeat 373..396 CDD:275380 7/22 (32%)
leucine-rich repeat 397..420 CDD:275380 6/22 (27%)
leucine-rich repeat 421..444 CDD:275380 8/22 (36%)
LRR_8 477..536 CDD:290566 17/60 (28%)
leucine-rich repeat 478..502 CDD:275380 8/25 (32%)
leucine-rich repeat 503..526 CDD:275380 5/22 (23%)
Ig <714..761 CDD:299845 12/33 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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