DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and Islr2

DIOPT Version :10

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001155007.1 Gene:Islr2 / 320563 MGIID:2444277 Length:789 Species:Mus musculus


Alignment Length:423 Identity:107/423 - (25%)
Similarity:167/423 - (39%) Gaps:103/423 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 LPGMRNLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGI 406
            ||.  |:.:|:|:.|.|..::..|..|.:::.||.|.|:::..::..|...|..|.:||||:|.|
Mouse    93 LPA--NVTTLSLSANKITVLRRGAFVNVTQVTSLWLAHSEVRTVESGALAVLSQLKNLDLSHNLI 155

  Fly   407 VAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESL 471
            .....:.|::||.|.:|.:.||.|.:|..|.:..||.||.||:..|.:..:.....|....|..|
Mouse   156 SNFPWSDLRNLSALQLLKMNHNRLGSLPRDALGALPDLRSLRINNNRLRTLEPGTFDALSALSHL 220

  Fly   472 QMQENPLSCDCSIRPFAEWLQ--ESQLHSSL----SASCVTPPRLEGAPLLQVPVETLSCDMDNV 530
            |:..||..|.|.:    .|||  .:....||    |.:|.:||.|:|.|:.::|  .|.|...:|
Mouse   221 QLYHNPFHCSCGL----VWLQAWAASTRVSLPEPDSIACASPPELQGVPVHRLP--ALPCAPPSV 279

  Fly   531 EKDNANIMQHLETLAKPNQTSPIKDLSEEI--ILH---ELHFSTDYGLILTWLLNLSKKDYMCDA 590
            ...           |:|...:|...|...:  :||   |.|.:..    |.|.|.:.....:...
Mouse   280 RLS-----------AEPPPEAPGTPLRAGLAFMLHCVAEGHPTPR----LQWQLQIPGGTVVLVP 329

  Fly   591 IFVYKEEHINEILIDNS-------PIHCES-------------------KVVNGQNTVSVIVPDS 629
            ..:.|||...:.:.|..       |...|:                   .:.||    |::||..
Mouse   330 PVLSKEEDGGDKVEDGEGDGDEDLPTQTEAPTPTPAPAWPAPPATPRFLALANG----SLLVPLL 390

  Fly   630 SSLEIGESYRFCLVMIQEQKPDSELNIGCSNITRLERSSPGAVPVSRQYQRRPYYNANELKPEVV 694
            |:.|.|         |...:..:||.   :|.|.|..:...|.|                 |:..
Mouse   391 SAKEAG---------IYTCRAHNELG---TNSTSLRVTVAAAGP-----------------PKHA 426

  Fly   695 HDAGE--DYQV--------NQRRFNSVVGSQPQ 717
            ...||  |.||        .:.|.|||:..:|:
Mouse   427 PGTGEEPDAQVPTSERKATTKGRSNSVLPFKPE 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR 175..582 CDD:443914 74/250 (30%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380
leucine-rich repeat 249..272 CDD:275380
leucine-rich repeat 273..296 CDD:275380
leucine-rich repeat 297..322 CDD:275380
leucine-rich repeat 323..347 CDD:275380 2/4 (50%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..419 CDD:275380 9/22 (41%)
leucine-rich repeat 420..443 CDD:275380 8/22 (36%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
Islr2NP_001155007.1 leucine-rich repeat 80..96 CDD:275380 2/4 (50%)
LRR <95..>227 CDD:443914 42/133 (32%)
leucine-rich repeat 97..120 CDD:275380 6/22 (27%)
leucine-rich repeat 121..144 CDD:275380 6/22 (27%)
leucine-rich repeat 145..168 CDD:275380 9/22 (41%)
leucine-rich repeat 169..192 CDD:275380 8/22 (36%)
leucine-rich repeat 193..216 CDD:275380 6/22 (27%)
PCC 198..>272 CDD:188093 22/79 (28%)
Ig_3 276..404 CDD:464046 27/155 (17%)
Ig <395..417 CDD:472250 7/33 (21%)
Blue background indicates that the domain is not in the aligned region.

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