DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and lron-8

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_491676.2 Gene:lron-8 / 181983 WormBaseID:WBGene00020693 Length:341 Species:Caenorhabditis elegans


Alignment Length:297 Identity:74/297 - (24%)
Similarity:125/297 - (42%) Gaps:63/297 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 RLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLG----DYA 311
            :|||.::.:     .|.:.|:.|..|..::|||:.|.:|.|..:|.::.|.|..|::.    |..
 Worm    58 KLDLTDDLV-----PDGINLSHLTLLNATDNQITRIGRRGFDKIRNMQFLYLSINQISHSQPDPF 117

  Fly   312 QSLRSLSQCLSLRQLDLQANN-LNGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANFSRLVSL 375
            |:|..|.:        |:.|: |:|.:.|::          ::.||...| :|    :|..|..:
 Worm   118 QALEKLKR--------LEMNDALDGNMEEKS----------DMLRNFFHS-KN----SFVHLAQI 159

  Fly   376 SLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAP 440
            .|..|:|:.:....|.|:..|..|:||.|.|.:.                  :|.|..       
 Worm   160 ELNKNKIEGIYPKTFCGIQGLQRLELSNNRIPSF------------------DFARTC------- 199

  Fly   441 LPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDC-SIRPFAEWLQESQLHSSLSASC 504
            |..|:.|.||||.|..:..:..|....|.||.:..||:.||| :||..:.  .:....:.....|
 Worm   200 LKELKALMLAGNLIQKIPADIWDFLPSLSSLDISNNPIDCDCATIRLLSG--DDVVFLNQADTKC 262

  Fly   505 VTPPRLEGAPLLQVPVETLSCDMDNVEKDNANIMQHL 541
            .:||.|||..:.::..:  .|......:..|:..|.|
 Worm   263 ASPPELEGKRIFELSRD--YCKTTRNPRGKASFFQFL 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 23/87 (26%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380
LRR_8 249..307 CDD:290566 17/55 (31%)
leucine-rich repeat 249..272 CDD:275380 5/20 (25%)
LRR_RI <270..479 CDD:238064 55/213 (26%)
leucine-rich repeat 273..296 CDD:275380 8/22 (36%)
leucine-rich repeat 297..322 CDD:275380 7/28 (25%)
LRR_8 322..382 CDD:290566 13/60 (22%)
leucine-rich repeat 323..347 CDD:275380 5/24 (21%)
leucine-rich repeat 348..371 CDD:275380 5/22 (23%)
LRR_8 370..428 CDD:290566 12/57 (21%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..419 CDD:275380 6/22 (27%)
LRR_8 418..478 CDD:290566 15/59 (25%)
leucine-rich repeat 420..443 CDD:275380 3/22 (14%)
leucine-rich repeat 444..467 CDD:275380 8/22 (36%)
LRRCT 476..526 CDD:214507 13/50 (26%)
lron-8NP_491676.2 LRR <71..>237 CDD:227223 54/213 (25%)
leucine-rich repeat 75..98 CDD:275380 8/22 (36%)
leucine-rich repeat 99..122 CDD:275380 6/22 (27%)
leucine-rich repeat 123..158 CDD:275380 12/57 (21%)
leucine-rich repeat 159..179 CDD:275380 5/19 (26%)
leucine-rich repeat 180..202 CDD:275380 9/46 (20%)
leucine-rich repeat 203..226 CDD:275380 8/22 (36%)
LRRCT 235..282 CDD:214507 13/50 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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