DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and lron-11

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_491035.1 Gene:lron-11 / 171837 WormBaseID:WBGene00022129 Length:542 Species:Caenorhabditis elegans


Alignment Length:419 Identity:111/419 - (26%)
Similarity:180/419 - (42%) Gaps:50/419 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 ITGTRNAELECGCDLPHTLRC-NIDLHGMMLLADRLRTSPYSISLLDCSLRNVTFLSDAKIFDNV 198
            ::|..:.:..|.|....|..| ...|..:.:|.|...|      :||.|...::.||..::....
 Worm    12 VSGVISCQSGCKCPTKTTAVCKGSSLRSIPILLDPRTT------VLDLSNNRISRLSADELSLYP 70

  Fly   199 SLHGLVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIKALG 263
            :|..|::.:..|..:....|..:.. |:.|.|..|:|:|:|....|.|..|:.|.:::|.:: ||
 Worm    71 NLEQLILHNNSITHLSADVFSTLPS-LRVLDLSSNSLLSLPNEVFSKLKNLKTLIISSNDVQ-LG 133

  Fly   264 TADFVGLTSLVYLELSNNQIS------------------------SISQRTFVNLRKLEVLKLGG 304
            ...|.||:.|..|.:::|::|                        |:......||..||.|||..
 Worm   134 PECFAGLSQLQTLSIADNRLSFLPPSVLKPLSGLRNLDLSANKLLSMPASVMNNLGGLETLKLKQ 198

  Fly   305 NRLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANF 369
            |.|......: .||| ..|:.||: :.||.|.:.|..|.|:..||:|||..|.:..:..... :.
 Worm   199 NLLSSLETGM-FLSQ-KELKHLDV-SENLIGDIEEGALYGLEKLETLNLTNNQLVRLPGNTW-SL 259

  Fly   370 SRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYN-GIVAISSASLQHLSRLTVLDLTHNFLRAL 433
            ..|.:|.|..|....|:..:|.||.||..|::|:: .:..|..|:...||.|..|.::.:.|..:
 Worm   260 PALKTLDLSSNLFVSLETASFDGLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSISSSALTHI 324

  Fly   434 TSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRPFAEWLQESQLHS 498
            ......|:|.|..|.|:.|::..||...:... .:.:|.:..|...|.|.:|       .|.|:.
 Worm   325 HPSAFNPIPPLSHLDLSNNELRYVAPGMLQWP-NIRNLHLANNDWHCSCDLR-------VSNLNP 381

  Fly   499 SLSASCVTPPRLEGAPLLQVPVETLSCDM 527
            ...|.|..|..|.|||:    .|..||.:
 Worm   382 RDDAKCSGPENLAGAPI----NELSSCSI 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 53/207 (26%)
leucine-rich repeat 179..199 CDD:275378 5/19 (26%)
leucine-rich repeat 200..223 CDD:275380 4/22 (18%)
leucine-rich repeat 225..248 CDD:275380 9/22 (41%)
LRR_8 249..307 CDD:290566 21/81 (26%)
leucine-rich repeat 249..272 CDD:275380 8/22 (36%)
LRR_RI <270..479 CDD:238064 62/233 (27%)
leucine-rich repeat 273..296 CDD:275380 7/46 (15%)
leucine-rich repeat 297..322 CDD:275380 10/24 (42%)
LRR_8 322..382 CDD:290566 19/59 (32%)
leucine-rich repeat 323..347 CDD:275380 9/23 (39%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
LRR_8 370..428 CDD:290566 18/58 (31%)
leucine-rich repeat 372..395 CDD:275380 8/22 (36%)
leucine-rich repeat 396..419 CDD:275380 6/23 (26%)
LRR_8 418..478 CDD:290566 14/59 (24%)
leucine-rich repeat 420..443 CDD:275380 4/22 (18%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
LRRCT 476..526 CDD:214507 15/49 (31%)
lron-11NP_491035.1 leucine-rich repeat 48..71 CDD:275380 6/28 (21%)
LRR_RI <50..177 CDD:238064 30/128 (23%)
LRR_8 70..130 CDD:290566 16/60 (27%)
leucine-rich repeat 72..95 CDD:275380 4/22 (18%)
leucine-rich repeat 96..119 CDD:275380 9/22 (41%)
LRR_8 118..177 CDD:290566 12/59 (20%)
leucine-rich repeat 120..142 CDD:275380 8/22 (36%)
LRR_RI <141..270 CDD:238064 35/132 (27%)
leucine-rich repeat 143..166 CDD:275380 4/22 (18%)
leucine-rich repeat 167..190 CDD:275380 3/22 (14%)
LRR_8 190..249 CDD:290566 25/61 (41%)
leucine-rich repeat 191..214 CDD:275380 10/24 (42%)
leucine-rich repeat 215..238 CDD:275380 9/23 (39%)
LRR_8 238..295 CDD:290566 18/57 (32%)
leucine-rich repeat 239..261 CDD:275380 6/22 (27%)
leucine-rich repeat 262..283 CDD:275380 6/20 (30%)
LRR_8 284..345 CDD:290566 17/60 (28%)
leucine-rich repeat 286..310 CDD:275380 6/23 (26%)
leucine-rich repeat 311..334 CDD:275380 4/22 (18%)
leucine-rich repeat 335..357 CDD:275380 6/22 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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