DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and lrrn3a

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:XP_005163128.1 Gene:lrrn3a / 101887059 ZFINID:ZDB-GENE-061220-7 Length:691 Species:Danio rerio


Alignment Length:657 Identity:148/657 - (22%)
Similarity:240/657 - (36%) Gaps:169/657 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 CGCDL------------PHTLRCNIDLHGMMLLADRLRT----------------SP--YSISL- 178
            |.|::            ..|:.|| || |::.|.:||.:                ||  |.::| 
Zfish    33 CKCEIRPWFSPLSMYNEAPTVDCN-DL-GLLTLPERLPSDTQVLLSQANSIAKIDSPLDYLVNLT 95

  Fly   179 -LDCSLRNVTFLSDAKIFDNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNA 242
             :|.|..|::.|||..|             |.|.:            |.:|.|..|.|.|:..|.
Zfish    96 EVDLSRNNISSLSDIYI-------------GHIPQ------------LLSLHLEENWLSSLHDNF 135

  Fly   243 LSTLSALERLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRL 307
            |:....|:.|.:.:|.:..:....|.||..|:.|.|::||:.:|....|.:|.:||:|.:|.|.:
Zfish   136 LAHFPNLQELYVNHNLLSLISAEAFQGLNKLLRLHLNSNQLRAIRSEWFQDLSQLEILMIGENPI 200

  Fly   308 GDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANFSRL 372
            . ..|:: :....::||.|.|...||. .:.:..|.|:..|||::...|:...:...||.....|
Zfish   201 A-RIQNM-NFKPLINLRSLVLTRMNLT-EIPDSALVGLDKLESVSFYDNMFPKVPQAALRQVRNL 262

  Fly   373 VSLSLRHNQIDVLQDHAFFGLGALDSLDL-SYNGIVAISSASLQHLSRLTVLDLTHN-FLRALTS 435
            ..|.|..|.|:.:|...|..:..|..|.: |...:|:|.|.:|.:|..||.::.|:| .|..:..
Zfish   263 KFLDLNKNPIERIQRGDFVDMIHLKELGINSMPELVSIDSFALHNLPELTKIEATNNPRLSYIHP 327

  Fly   436 DLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRPFAEWLQES------ 494
            :..:.||.|..|.|..|.:..:....::....|:.:.:..||:.|||.||    |:..:      
Zfish   328 NAFSQLPRLESLMLNSNALRALHHITVESLPNLQEVSIHSNPIYCDCVIR----WINMNNTRVRF 388

  Fly   495 -QLHSSLSASCVTPPRLEGAPLLQV----------PVETLSCDMDNVEKDNANIMQ-HLETLAKP 547
             :|.:.|   |..|...||..:.||          |:.:.....|.|.....:::. |....|.|
Zfish   389 MELDALL---CAGPSEFEGRLVKQVHSREMADICLPLISPESLPDQVNVGTGHLVSLHCRAFADP 450

  Fly   548 NQTSPIKDLSEEIILHEL-----HFSTDYGLILTWLLNLSKKDYMCDA----------------- 590
            .........|.|.||.::     |...:....:..:.......|.|.|                 
Zfish   451 EPEIYWVTPSGEKILPQMDSKKYHLHPEGTFDIYGITENEAGQYTCVAHNLIGVDMRSVLVIVNG 515

  Fly   591 ---IFVYKEEHI-------NEILID----------------NSPIHC---ESKVVNG-------- 618
               :.|.:..||       |.:.|.                ||..|.   .|.||:.        
Zfish   516 YYPLLVNESLHIQVENTEPNSVSISWVPPKGSLVSNIKWSTNSQHHSLQFTSHVVSNVKKFYLTN 580

  Fly   619 -----QNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELN----------------IGCSNIT 662
                 |..|.|.:.|..|..:..........:.::|.|..:|                :.||.|.
Zfish   581 LHSLTQYEVCVEITDMQSRHLKNCINVTTTEVSKRKNDDVINDGLIISLTAVLLIMSAVACSFIC 645

  Fly   663 RLERSSP 669
            .|.|:.|
Zfish   646 MLRRNDP 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 55/202 (27%)
leucine-rich repeat 179..199 CDD:275378 7/19 (37%)
leucine-rich repeat 200..223 CDD:275380 2/22 (9%)
leucine-rich repeat 225..248 CDD:275380 8/22 (36%)
LRR_8 249..307 CDD:290566 19/57 (33%)
leucine-rich repeat 249..272 CDD:275380 6/22 (27%)
LRR_RI <270..479 CDD:238064 58/210 (28%)
leucine-rich repeat 273..296 CDD:275380 8/22 (36%)
leucine-rich repeat 297..322 CDD:275380 6/24 (25%)
LRR_8 322..382 CDD:290566 18/59 (31%)
leucine-rich repeat 323..347 CDD:275380 8/23 (35%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
LRR_8 370..428 CDD:290566 18/58 (31%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..419 CDD:275380 8/23 (35%)
LRR_8 418..478 CDD:290566 13/60 (22%)
leucine-rich repeat 420..443 CDD:275380 6/23 (26%)
leucine-rich repeat 444..467 CDD:275380 4/22 (18%)
LRRCT 476..526 CDD:214507 17/66 (26%)
lrrn3aXP_005163128.1 LRR_RI 29..>272 CDD:238064 70/268 (26%)
leucine-rich repeat 52..70 CDD:275380 9/19 (47%)
leucine-rich repeat 71..93 CDD:275380 3/21 (14%)
leucine-rich repeat 94..117 CDD:275380 10/35 (29%)
leucine-rich repeat 118..141 CDD:275380 8/22 (36%)
LRR_8 140..200 CDD:290566 19/59 (32%)
leucine-rich repeat 142..165 CDD:275380 6/22 (27%)
leucine-rich repeat 166..189 CDD:275380 8/22 (36%)
leucine-rich repeat 190..213 CDD:275380 6/24 (25%)
LRR_8 213..272 CDD:290566 18/59 (31%)
leucine-rich repeat 214..237 CDD:275380 8/23 (35%)
leucine-rich repeat 238..261 CDD:275380 6/22 (27%)
leucine-rich repeat 262..285 CDD:275380 7/22 (32%)
leucine-rich repeat 286..310 CDD:275380 8/23 (35%)
LRR_8 309..370 CDD:290566 13/60 (22%)
leucine-rich repeat 311..333 CDD:275380 5/21 (24%)
leucine-rich repeat 336..359 CDD:275378 4/22 (18%)
leucine-rich repeat 360..372 CDD:275378 3/11 (27%)
LRRCT 368..412 CDD:214507 16/50 (32%)
IG_like 429..513 CDD:214653 13/83 (16%)
Ig 437..513 CDD:299845 11/75 (15%)
FN3 526..>591 CDD:238020 12/64 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24366
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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