DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and waif2

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001245160.1 Gene:waif2 / 100884149 ZFINID:ZDB-GENE-120209-3 Length:313 Species:Danio rerio


Alignment Length:231 Identity:68/231 - (29%)
Similarity:102/231 - (44%) Gaps:39/231 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 SQCLSLRQLDL-----QANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANFSRLVSLSL 377
            :|.|:|..:::     :|.:.||       ....:|..|:|..|.|:.||:.|.....||..|.|
Zfish    41 TQILTLNNVNMSVLIERAFSANG-------TNAHSLHELSLRDNNIQVIQSCAFCGLHRLHLLDL 98

  Fly   378 RHNQIDVLQDHAFFGLGALDSLDLSYN----GIVAISSASLQHLSRLTVLDLTHNFLRALTSDLI 438
            ..|:::.:...||..|..|.:|:|||.    |...:||| |..||.|.:|||:.|.|:.:     
Zfish    99 SRNRLEDVHPEAFSELNQLRNLNLSYTLTAAGANQLSSA-LDSLSNLQILDLSGNRLKTI----- 157

  Fly   439 APLP-----SLRELRLAGNDISIVARNAMDGARELESLQ--MQENPLSCDCS-IRPFAEWLQESQ 495
             ||.     ||..|.|..|.|:.:..|.:....|...::  :..||..|.|. :|.|.:||:.  
Zfish   158 -PLSGFGKFSLTMLNLTHNSITTLDTNELTKLSEYREMRVYLSHNPFDCRCDRLREFHDWLKN-- 219

  Fly   496 LHSSLSASCVTPPRLEGA-PLLQVPVETLSCDMDNV 530
                 |:.|.....|..| |.:|..:...|.|..||
Zfish   220 -----SSQCADSKNLRCALPKVQKDLRVESVDCKNV 250

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 4/20 (20%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380
LRR_8 249..307 CDD:290566
leucine-rich repeat 249..272 CDD:275380
LRR_RI <270..479 CDD:238064 52/176 (30%)
leucine-rich repeat 273..296 CDD:275380
leucine-rich repeat 297..322 CDD:275380 1/3 (33%)
LRR_8 322..382 CDD:290566 17/64 (27%)
leucine-rich repeat 323..347 CDD:275380 4/28 (14%)
leucine-rich repeat 348..371 CDD:275380 8/22 (36%)
LRR_8 370..428 CDD:290566 24/61 (39%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..419 CDD:275380 11/26 (42%)
LRR_8 418..478 CDD:290566 18/66 (27%)
leucine-rich repeat 420..443 CDD:275380 8/27 (30%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
LRRCT 476..526 CDD:214507 15/51 (29%)