Sequence 1: | NP_001286640.1 | Gene: | Lrt / 37342 | FlyBaseID: | FBgn0034540 | Length: | 830 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_004916940.1 | Gene: | slitrk2 / 100497153 | XenbaseID: | XB-GENE-964776 | Length: | 846 | Species: | Xenopus tropicalis |
Alignment Length: | 855 | Identity: | 166/855 - (19%) |
---|---|---|---|
Similarity: | 270/855 - (31%) | Gaps: | 321/855 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 156 NIDLHGMMLLADRLRTSPYSISLLDCSLR-------NVTFLS-DAKIFDNVSL--------HGLV 204
Fly 205 ISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIKALGTADFVG 269
Fly 270 LTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLGDYAQSL-RSLSQCLSLRQLDLQANNL 333
Fly 334 N---------------------------------------------------------------- 334
Fly 335 ----------------------------------------------------------------- 334
Fly 335 -GPL--------------------SEQTLPGMR-------------------------------- 346
Fly 347 -----------NLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLD 400
Fly 401 LSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPLPSLRELRLAGNDI-SIVARNAMDG 464
Fly 465 ARELESLQMQENPLSCDCSIRPFAEWLQESQLHSSL---SASCVTPPRLEGAPLLQVPVETLSCD 526
Fly 527 MDNVEKDNANIMQHLETLAKPNQ--TSPIKDLSEEIILHELHFSTDYGLILTWLLNLSKKDYMCD 589
Fly 590 A----IFVYK------------------------------------EEHINEIL------IDNSP 608
Fly 609 IHCE-----------------SKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNI 656
Fly 657 GCSNITRLERSSPGAVPVSRQYQRRPYYNANELKPEVVHDAGEDYQVNQRRFNSVV--GSQ---- 715
Fly 716 PQQTQQSTLL 725 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrt | NP_001286640.1 | LRR_RI | <151..334 | CDD:238064 | 58/194 (30%) |
leucine-rich repeat | 179..199 | CDD:275378 | 6/27 (22%) | ||
leucine-rich repeat | 200..223 | CDD:275380 | 4/30 (13%) | ||
leucine-rich repeat | 225..248 | CDD:275380 | 6/22 (27%) | ||
LRR_8 | 249..307 | CDD:290566 | 27/57 (47%) | ||
leucine-rich repeat | 249..272 | CDD:275380 | 11/22 (50%) | ||
LRR_RI | <270..479 | CDD:238064 | 74/403 (18%) | ||
leucine-rich repeat | 273..296 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 297..322 | CDD:275380 | 8/25 (32%) | ||
LRR_8 | 322..382 | CDD:290566 | 23/252 (9%) | ||
leucine-rich repeat | 323..347 | CDD:275380 | 10/216 (5%) | ||
leucine-rich repeat | 348..371 | CDD:275380 | 9/22 (41%) | ||
LRR_8 | 370..428 | CDD:290566 | 20/57 (35%) | ||
leucine-rich repeat | 372..395 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 396..419 | CDD:275380 | 8/22 (36%) | ||
LRR_8 | 418..478 | CDD:290566 | 18/60 (30%) | ||
leucine-rich repeat | 420..443 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 444..467 | CDD:275380 | 7/23 (30%) | ||
LRRCT | 476..526 | CDD:214507 | 12/52 (23%) | ||
slitrk2 | XP_004916940.1 | LRR | <44..>197 | CDD:227223 | 50/157 (32%) |
leucine-rich repeat | 66..87 | CDD:275380 | 3/20 (15%) | ||
leucine-rich repeat | 90..111 | CDD:275380 | 6/20 (30%) | ||
LRR_8 | 111..170 | CDD:338972 | 27/58 (47%) | ||
leucine-rich repeat | 112..135 | CDD:275380 | 11/22 (50%) | ||
leucine-rich repeat | 136..159 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 160..182 | CDD:275380 | 8/25 (32%) | ||
leucine-rich repeat | 183..207 | CDD:275380 | 6/23 (26%) | ||
leucine-rich repeat | 208..369 | CDD:275380 | 4/160 (3%) | ||
TPKR_C2 | 216..>252 | CDD:387596 | 0/35 (0%) | ||
leucine-rich repeat | 370..400 | CDD:275380 | 0/29 (0%) | ||
LRR_8 | 400..459 | CDD:338972 | 22/58 (38%) | ||
leucine-rich repeat | 401..424 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 425..448 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 449..468 | CDD:275380 | 7/18 (39%) | ||
leucine-rich repeat | 496..509 | CDD:275378 | 4/12 (33%) | ||
leucine-rich repeat | 521..533 | CDD:275378 | 4/11 (36%) | ||
LRRCT | 529..579 | CDD:214507 | 12/51 (24%) | ||
Thioredoxin_like | 728..>822 | CDD:381987 | 24/111 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |