DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and slitrk2

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:XP_004916940.1 Gene:slitrk2 / 100497153 XenbaseID:XB-GENE-964776 Length:846 Species:Xenopus tropicalis


Alignment Length:855 Identity:166/855 - (19%)
Similarity:270/855 - (31%) Gaps:321/855 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 NIDLHGMMLLADRLRTSPYSISLLDCSLR-------NVTFLS-DAKIFDNVSL--------HGLV 204
            :|.|..::.|...|:|.....:...|.:|       ||..:: :.|.|.:|||        :.|.
 Frog     4 SIWLLSVISLTGILKTESRKTAKDICKIRCVCEEKENVLNINCENKGFTSVSLLLPPQSRIYQLF 68

  Fly   205 ISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIKALGTADFVG 269
            ::...:.|::.:.|:.....: .|.|..|.|..:...|.:.|..|:||.|.|||::.|....|.|
 Frog    69 LNGNLLSRLYPNEFVNYSNAV-TLHLGNNELQEIKTGAFNGLKTLKRLHLNNNKLEVLREETFQG 132

  Fly   270 LTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLGDYAQSL-RSLSQCLSLRQLDLQANNL 333
            |.||.||:...|.||.|....|..|.||:||.|..|.|    .|| .::.:.:.|..|||:.|.|
 Frog   133 LESLEYLQADYNFISIIEAGAFSKLNKLKVLILNDNLL----LSLPNNVFRFVLLTHLDLRGNRL 193

  Fly   334 N---------------------------------------------------------------- 334
            .                                                                
 Frog   194 KMLPFAGVLEHIGGIMEIQLEENPWNCTCDLIPLKAWLDTITVFVGEIVCETPFRLHGKDVTQLT 258

  Fly   335 ----------------------------------------------------------------- 334
                                                                             
 Frog   259 RQDLCPRKSSSDTNQRPAFSDPRIHRIPPTFNPAIIPTRVPKASRPPKTRNRPTPRVTVSKDRQI 323

  Fly   335 -GPL--------------------SEQTLPGMR-------------------------------- 346
             ||:                    |:.:..|:.                                
 Frog   324 FGPIMVYQTKSPVPLTCPESCVCTSQNSDSGLNINCQERKISNISDLQPKPTHPRKLYLTGNYLQ 388

  Fly   347 -----------NLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLD 400
                       :|:.|:|..|.|..||..|.:|.:.|..|.|..|.:::|....|.||.:|..|.
 Frog   389 TVYKADLLEFGSLDLLHLGNNRIAMIQEGAFSNLTSLRRLYLNGNYLEILYPSIFDGLYSLQYLY 453

  Fly   401 LSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPLPSLRELRLAGNDI-SIVARNAMDG 464
            |.||.|..|...:...||.|.:|.|.:|.||:|..::... .:|..|.|..|.. |:.|:..:|.
 Frog   454 LEYNVIKDILPRTFDALSNLQLLFLNNNLLRSLPENVFEG-TALTRLNLRNNHFSSLPAKGVLDQ 517

  Fly   465 ARELESLQMQENPLSCDCSIRPFAEWLQESQLHSSL---SASCVTPPRLEGAPLLQVPVETLSCD 526
            ......:.:||||..|:|.|.....|:::|.  |::   ..:|.:|.:..|..|..:..:.:..|
 Frog   518 LTVFIQIDLQENPWDCNCDILGLKNWIEQSS--STVVVQEVTCDSPLKHAGEHLRLLSKDVICPD 580

  Fly   527 MDNVEKDNANIMQHLETLAKPNQ--TSPIKDLSEEIILHELHFSTDYGLILTWLLNLSKKDYMCD 589
            ..|:.........|......|::  .||..:|..|:.|..|..    ||::.::|:      :|.
 Frog   581 YPNMSDATLLSYNHKSFTPHPSRIYPSPYPELHTEVPLSVLIL----GLLVVFILS------VCF 635

  Fly   590 A----IFVYK------------------------------------EEHINEIL------IDNSP 608
            .    :||.|                                    |.|:...:      :..:|
 Frog   636 GAGLFVFVLKRRKGVQSVPSSSANNLDISSFQLQYGSYNANSNDKTEAHVYNYIPPPVGQMCQNP 700

  Fly   609 IHCE-----------------SKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNI 656
            |:.:                 ||:.:.:.....|....|:.|          ::::|:|..|..:
 Frog   701 IYMQKEGDPVAYYRNLQEFSYSKLDHKKEDPPTIAYTISTTE----------LMEKQQPPEEPEL 755

  Fly   657 GCSNITRLERSSPGAVPVSRQYQRRPYYNANELKPEVVHDAGEDYQVNQRRFNSVV--GSQ---- 715
            ...||....:..|.|..|        :||...|....:..|.|..:.||.|.|..|  |:.    
 Frog   756 LYQNIAERVKELPSAGVV--------HYNFCTLPKRQLMPAYETRRQNQDRLNKTVLYGTPRKYF 812

  Fly   716 PQQTQQSTLL 725
            .:|::|..||
 Frog   813 AEQSKQEHLL 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 58/194 (30%)
leucine-rich repeat 179..199 CDD:275378 6/27 (22%)
leucine-rich repeat 200..223 CDD:275380 4/30 (13%)
leucine-rich repeat 225..248 CDD:275380 6/22 (27%)
LRR_8 249..307 CDD:290566 27/57 (47%)
leucine-rich repeat 249..272 CDD:275380 11/22 (50%)
LRR_RI <270..479 CDD:238064 74/403 (18%)
leucine-rich repeat 273..296 CDD:275380 9/22 (41%)
leucine-rich repeat 297..322 CDD:275380 8/25 (32%)
LRR_8 322..382 CDD:290566 23/252 (9%)
leucine-rich repeat 323..347 CDD:275380 10/216 (5%)
leucine-rich repeat 348..371 CDD:275380 9/22 (41%)
LRR_8 370..428 CDD:290566 20/57 (35%)
leucine-rich repeat 372..395 CDD:275380 8/22 (36%)
leucine-rich repeat 396..419 CDD:275380 8/22 (36%)
LRR_8 418..478 CDD:290566 18/60 (30%)
leucine-rich repeat 420..443 CDD:275380 7/22 (32%)
leucine-rich repeat 444..467 CDD:275380 7/23 (30%)
LRRCT 476..526 CDD:214507 12/52 (23%)
slitrk2XP_004916940.1 LRR <44..>197 CDD:227223 50/157 (32%)
leucine-rich repeat 66..87 CDD:275380 3/20 (15%)
leucine-rich repeat 90..111 CDD:275380 6/20 (30%)
LRR_8 111..170 CDD:338972 27/58 (47%)
leucine-rich repeat 112..135 CDD:275380 11/22 (50%)
leucine-rich repeat 136..159 CDD:275380 9/22 (41%)
leucine-rich repeat 160..182 CDD:275380 8/25 (32%)
leucine-rich repeat 183..207 CDD:275380 6/23 (26%)
leucine-rich repeat 208..369 CDD:275380 4/160 (3%)
TPKR_C2 216..>252 CDD:387596 0/35 (0%)
leucine-rich repeat 370..400 CDD:275380 0/29 (0%)
LRR_8 400..459 CDD:338972 22/58 (38%)
leucine-rich repeat 401..424 CDD:275380 9/22 (41%)
leucine-rich repeat 425..448 CDD:275380 8/22 (36%)
leucine-rich repeat 449..468 CDD:275380 7/18 (39%)
leucine-rich repeat 496..509 CDD:275378 4/12 (33%)
leucine-rich repeat 521..533 CDD:275378 4/11 (36%)
LRRCT 529..579 CDD:214507 12/51 (24%)
Thioredoxin_like 728..>822 CDD:381987 24/111 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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