DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and igsf10

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:XP_009289666.1 Gene:igsf10 / 100329456 ZFINID:ZDB-GENE-130530-827 Length:2497 Species:Danio rerio


Alignment Length:688 Identity:131/688 - (19%)
Similarity:242/688 - (35%) Gaps:200/688 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 YAQS-----LRSLSQC-----LSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQNK 364
            ||.|     .|.||:.     .::.:::|..|:|:. |....|.|:..||.|.|:.|:||::::.
Zfish    38 YAPSEVHCTFRYLSEMPGDIQTAVERINLGYNSLSS-LQANALSGLNKLELLMLHSNMIKTVEDS 101

  Fly   365 ALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNF 429
            |.:..:.|..|.:.:|:::.|....|.||..|..|.|.:|.|..|...|...|.||.:::|..|.
Zfish   102 AFSGLTSLQVLKMSYNRVEKLNKDTFRGLDNLVRLQLDHNLITFIHPESFYGLKRLQLINLEGNQ 166

  Fly   430 LRALTSDL--------IAPLPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRP 486
            |:.|..|.        |....||:.:.|:.|.:..:....:.|..::|:|.:..||.||||.:..
Zfish   167 LQQLHPDTFISVRFGQILKWSSLKTIYLSDNALGTLPAAVLSGCVKIENLFLSGNPWSCDCRMSW 231

  Fly   487 FAEWLQ----------ESQLHSSLSASCVTPPRLEGAPLLQVPVETLSCDMDNVEKDNANIMQHL 541
            .|:|::          :.:........|..|....|:.::|:..:..:|....: |....:....
Zfish   232 LAKWIEKHPGVLKCKRDKKFLKEPCPICEFPLSSRGSSIVQLQSDGYTCSRPQI-KPYLKLRNFT 295

  Fly   542 ETLAKPNQTSP-------------IKDLSEE---------------------------------- 559
            .|.....:.||             |||.|..                                  
Zfish   296 MTDGDYTEVSPVDFVAPIGSLEMNIKDQSHSDARVACLVQRPSSMENMSAIFGLDGKDVTALRAT 360

  Fly   560 ---IILHELHFS------------TDYGLILTWLLNLSKKDYMCDAIFVYKE------------- 596
               :::..:.:.            :|:.:||...|.:|.:.   ||::.||:             
Zfish   361 VSTLLVCNIDYDDIREIWDILATYSDFPMILERELAISLQS---DAVYTYKQAVSTAEDVFTEIE 422

  Fly   597 ---EHINEILIDNSPIHCESKVVNGQNTVSVIVPDSSSLEIG------ESYRFCLVMIQEQKPDS 652
               :.|.|.|:....:....:......|:::....:..:::|      :.|.:.::....|....
Zfish   423 AKIKAIPEWLMQGRVMLQLDRATTAFPTLTIKYLSTIQIDVGGSKNNRDEYSWTMIRRDNQTRTE 487

  Fly   653 EL-------NIGCSNITR----LERSSPGAVPVSRQYQRRPYYNANE-----------LKPEVVH 695
            .|       .:.|.....    :|...|....:     |.||.:.::           :|...:.
Zfish   488 HLLLVGGMTELNCQTFGNPKPIIEWILPDGSKI-----RAPYNSEDQRIVITHEGILSVKSAEIS 547

  Fly   696 DAG--------------------------EDYQVNQRRFNSVVG----------SQPQQTQQSTL 724
            |.|                          |:.::|..|.:..:|          |.||.:.| .:
Zfish   548 DTGVYHCIATSYLDADVLAFRVTVMPLDIEEEEINGIRVSHHLGQNLRLDCTSLSSPQASIQ-WI 611

  Fly   725 LHSYTVIDSLNKSFLPGLGLGVLVTSVLVLIWGATRIRQTG--GSSGGGGRNGDSIDSNSSSMHN 787
            |..:||:|   ||:    |...|..:..::|.|.| .|..|  ....|.....|.:.|..:...:
Zfish   612 LPDHTVLD---KSY----GKRTLHRNGTLVIHGLT-YRDIGFYRCLAGNFLGADLLASQVTIYDD 668

  Fly   788 NNNNSRPGTPTATTCYAASDH-IARLADAEN--GTRYL 822
            ..|::.|      |....|:| :.::.|...  |:|||
Zfish   669 WVNSTMP------THVKESNHRVVQIIDNSQTLGSRYL 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 8/33 (24%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380
LRR_8 249..307 CDD:290566
leucine-rich repeat 249..272 CDD:275380
LRR_RI <270..479 CDD:238064 52/186 (28%)
leucine-rich repeat 273..296 CDD:275380
leucine-rich repeat 297..322 CDD:275380 6/21 (29%)
LRR_8 322..382 CDD:290566 17/59 (29%)
leucine-rich repeat 323..347 CDD:275380 6/23 (26%)
leucine-rich repeat 348..371 CDD:275380 8/22 (36%)
LRR_8 370..428 CDD:290566 18/57 (32%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..419 CDD:275380 8/22 (36%)
LRR_8 418..478 CDD:290566 16/67 (24%)
leucine-rich repeat 420..443 CDD:275380 7/30 (23%)
leucine-rich repeat 444..467 CDD:275380 4/22 (18%)
LRRCT 476..526 CDD:214507 12/59 (20%)
igsf10XP_009289666.1 LRR_8 61..119 CDD:290566 17/58 (29%)
leucine-rich repeat 61..84 CDD:275380 6/23 (26%)
leucine-rich repeat 85..108 CDD:275380 8/22 (36%)
LRR_8 107..167 CDD:290566 19/59 (32%)
leucine-rich repeat 109..132 CDD:275380 7/22 (32%)
leucine-rich repeat 133..156 CDD:275380 8/22 (36%)
leucine-rich repeat 157..188 CDD:275380 7/30 (23%)
leucine-rich repeat 189..212 CDD:275380 4/22 (18%)
TPKR_C2 221..>238 CDD:301599 8/16 (50%)
Ig 490..557 CDD:299845 9/71 (13%)
IG_like 492..571 CDD:214653 9/83 (11%)
IG_like 590..652 CDD:214653 18/70 (26%)
Ig 594..655 CDD:143165 18/69 (26%)
IG_like 1529..1612 CDD:214653
Ig 1538..1611 CDD:299845
I-set 1621..1709 CDD:254352
Ig 1632..1709 CDD:299845
IG_like 1724..1806 CDD:214653
Ig 1729..1806 CDD:299845
I-set 1813..1898 CDD:254352
Ig 1833..1905 CDD:299845
I-set 1918..2009 CDD:254352
Ig 1928..2009 CDD:299845
IG 2022..2101 CDD:214652
IGc2 2028..2093 CDD:197706
I-set 2118..2203 CDD:254352
Ig 2134..2203 CDD:299845
IG_like 2218..2303 CDD:214653
IGc2 2225..2293 CDD:197706
I-set 2307..2397 CDD:254352
Ig <2337..2397 CDD:299845
IG_like 2409..2496 CDD:214653
Ig 2420..2493 CDD:143165
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24366
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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