DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and mxra5a

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:XP_001919144.3 Gene:mxra5a / 100151112 ZFINID:ZDB-GENE-090312-22 Length:2516 Species:Danio rerio


Alignment Length:636 Identity:136/636 - (21%)
Similarity:225/636 - (35%) Gaps:193/636 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 ALMSVPWNALSTLSALERLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLE 298
            :|::||   ......:||::|..|.|..:..:.|.||..:..|.:..|.:..|...||.:|..|:
Zfish    42 SLLTVP---AGVPKQVERMNLGFNTIHKITYSSFAGLRKMELLLMHGNNVHQIPDGTFRDLISLQ 103

  Fly   299 VLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQN 363
            :|||..|:|                 :|          ||.|||.|:.:|..|:|:.|.::.|..
Zfish   104 MLKLSYNKL-----------------KL----------LSRQTLMGLWSLTRLHLDHNRLEFIHP 141

  Fly   364 KALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHN 428
            .|....:.|..|.|..||:..|....|.....|....:|          :|:||.      |:.|
Zfish   142 DAFQGLTNLRLLHLEGNQLQQLHPATFSTFSVLGHFPVS----------TLKHLY------LSDN 190

  Fly   429 FLRALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRPFAEWLQE 493
            .|..|:..::|.:|                        .||||.:..||.:|||.:|.|.||.:.
Zfish   191 ILTTLSQKMLASMP------------------------YLESLSLHGNPWTCDCRMRWFNEWNKN 231

  Fly   494 SQ-----------LHSSLSASCVTPPRLEGAPLLQVPVETLSCDMDNVEKDNANIMQHLETLAKP 547
            ||           ....|...|.:|.:|:                          .:.|:.|.||
Zfish   232 SQGVLKCKKDKAYPSGQLCPLCFSPKQLK--------------------------KKQLQELEKP 270

  Fly   548 NQTSPIKDLSEEIILHELHFSTDYGLILTW------LLNLSKKDYMCDAIFVYKEEHINEILIDN 606
            ...|||..:|...|..|   .|:..| ||.      |.|:|         ....:||.:::    
Zfish   271 TCNSPIISISNRAISSE---DTESDL-LTMDEFRQPLGNIS---------LGLSDEHGHQV---- 318

  Fly   607 SPIHCESKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNIGCSNITRLERSSPGA 671
             .:.|            :::.......||..|      :.:.:....|.:....|..::|||   
Zfish   319 -DLEC------------LVIEPRELTSIGWDY------VNQYQISVNLTLTLDLICGIDRSS--- 361

  Fly   672 VPVSRQYQRRPYYN--ANELKPEVV--------HDAGEDYQVNQRRFNSV---VGSQPQQTQQST 723
              ..|.::...||:  ...|:.|::        :...:|.:.:...|..|   :.:.|....||:
Zfish   362 --YERLWRLIAYYSDVPAHLRREIMLSKDPYLSYRYRQDIERDALYFTGVKANIAANPPWLMQSS 424

  Fly   724 LLHSYTVIDSLNKSFLPGLGLGVLVTSVL------------VLIWGATRIRQTGGSSGGGGRNGD 776
            :......:.|.:|:.  .|.|...:|.|:            |||......|....:..|      
Zfish   425 MDLQLNRLQSTSKNV--RLILSTYMTDVMERETIRKQSQGWVLIESKNDTRTMQAAVVG------ 481

  Fly   777 SIDSNSSSMHNNNNNS----RPGTPTATTCYAASDHIARLADAENGTRYLK 823
            |....:.::|::.|.|    .|...|..|.|..|::  ||:.:.:|...:|
Zfish   482 SPTKINCTVHSSGNESVKWMLPDGSTIETPYRNSEN--RLSASSSGLLEIK 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 24/99 (24%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380 3/13 (23%)
LRR_8 249..307 CDD:290566 19/57 (33%)
leucine-rich repeat 249..272 CDD:275380 8/22 (36%)
LRR_RI <270..479 CDD:238064 50/208 (24%)
leucine-rich repeat 273..296 CDD:275380 6/22 (27%)
leucine-rich repeat 297..322 CDD:275380 6/24 (25%)
LRR_8 322..382 CDD:290566 17/59 (29%)
leucine-rich repeat 323..347 CDD:275380 7/23 (30%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
LRR_8 370..428 CDD:290566 13/57 (23%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..419 CDD:275380 5/22 (23%)
LRR_8 418..478 CDD:290566 11/59 (19%)
leucine-rich repeat 420..443 CDD:275380 5/22 (23%)
leucine-rich repeat 444..467 CDD:275380 0/22 (0%)
LRRCT 476..526 CDD:214507 15/60 (25%)
mxra5aXP_001919144.3 LRRNT 24..55 CDD:214470 3/15 (20%)
leucine-rich repeat 35..53 CDD:275380 3/13 (23%)
LRR_8 52..112 CDD:290566 19/59 (32%)
leucine-rich repeat 54..77 CDD:275380 8/22 (36%)
leucine-rich repeat 78..101 CDD:275380 6/22 (27%)
LRR_8 101..160 CDD:290566 23/85 (27%)
leucine-rich repeat 102..125 CDD:275380 13/49 (27%)
LRR_4 125..165 CDD:289563 12/39 (31%)
leucine-rich repeat 126..149 CDD:275380 6/22 (27%)
leucine-rich repeat 150..181 CDD:275380 9/40 (23%)
leucine-rich repeat 182..205 CDD:275380 9/52 (17%)
LRRCT 214..267 CDD:214507 16/78 (21%)
IG 478..559 CDD:214652 14/61 (23%)
Ig 485..545 CDD:143165 12/48 (25%)
IG 573..657 CDD:214652
IGc2 581..647 CDD:197706
I-set 1534..1626 CDD:254352
Ig 1554..1616 CDD:299845
I-set 1631..1727 CDD:254352
Ig 1646..1727 CDD:299845
IG_like 1740..1825 CDD:214653
IGc2 1746..1815 CDD:197706
IG_like 1841..1926 CDD:214653
IGc2 1849..1916 CDD:197706
I-set 1932..2030 CDD:254352
IGc2 1946..2020 CDD:197706
I-set 2035..2124 CDD:254352
IGc2 2050..2114 CDD:197706
Ig 2149..2224 CDD:299845
IG 2244..2321 CDD:214652
IGc2 2246..2312 CDD:197706
IG 2334..2407 CDD:214652
Ig 2341..2416 CDD:299845
IG 2429..2515 CDD:214652
Ig 2439..2512 CDD:143165
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24366
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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