DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrt and lrrn4

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001120279.1 Gene:lrrn4 / 100145335 XenbaseID:XB-GENE-877010 Length:705 Species:Xenopus tropicalis


Alignment Length:636 Identity:138/636 - (21%)
Similarity:215/636 - (33%) Gaps:204/636 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 SALERLDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLGDYA 311
            |..|.||::||.:..:........:.|.:|:|.:|||..|...:.| |..||.|.|..|.|.|  
 Frog    57 SDTEALDMSNNSLTTITQPSLSRFSQLQWLDLKDNQIQDIYCGSDV-LENLEYLDLSSNNLSD-- 118

  Fly   312 QSLRSLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANFSRLVSLS 376
                 :.:|..|::                      |:.|:|.||.|..||:.|.:.|..||.|:
 Frog   119 -----VPRCSKLQR----------------------LKWLSLARNPISQIQDFAFSYFPSLVFLN 156

  Fly   377 LRHNQIDVLQDHAFFGLGALDSLDLS-YNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAP 440
            |.:.:           ||...|.||| ::..:.:..|.::  |.:..|||:..||..:.....:.
 Frog   157 LSYTE-----------LGKSPSGDLSVFSFALKVPGAPVK--SSIETLDLSSTFLSEVGPFWTSY 208

  Fly   441 LPSLRELRLAGNDISIVARNAMDGARELESLQMQENP----LSC--------------------- 480
            |.:|:||.|          .:|...:.||.:...:.|    |||                     
 Frog   209 LKNLKELYL----------RSMSNIKTLEKILTLDFPRLELLSCAHSSALASLDQSLFENGSHLK 263

  Fly   481 -----DCSIRPFAEWLQESQLHSSLSASCVTPPRLEGAPLLQVPVETLSCDMDNVEKDNANIMQH 540
                 :|::....:| ..|..|.||.        |.|.||      ...|||..:..:..|:   
 Frog   264 HVDLENCNLTAVPQW-NISSPHLSLV--------LLGNPL------ACRCDMTWLVSEQINV--- 310

  Fly   541 LETLAKPNQTSPIKDLSEEIILHELHFS-----TDYGLI-LTWLLNLSKKDYMCDAIFVYKEEHI 599
              ||.:.|:|...:....||.|.:|:..     |.|..: .|.....|..|   ..:|.....|:
 Frog   311 --TLIRANETLCRQGDGLEISLVQLNGECQKKPTPYATVNNTPTAANSLND---SVVFTSTPLHL 370

  Fly   600 ------NEILIDNSPIHCESKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNIGC 658
                  :.:.:|.:.|  ..||......::|....||....|          |.|.|.::     
 Frog   371 TPPHETSTVPLDKATI--TQKVEKNTGIITVFKQTSSDSFNG----------QHQNPATQ----- 418

  Fly   659 SNITRLERSSPGAVPVSRQYQRRPYYNANELKPEVVHDAGEDYQVNQRRFNSVVG--SQP----- 716
            :....||.::.......:......|::...|.    .|:|  ..:.....||:||  :||     
 Frog   419 ATTVLLEGTNVPTTSFGKSEAATKYFSGTSLS----KDSG--LTLRTSTINSLVGQITQPPPTVS 477

  Fly   717 ---------------------QQTQQSTLLHSYT----------------VIDSLNKSFLPGLGL 744
                                 ..|||:|.|.|.:                .:..|...|.||| .
 Frog   478 KKPNISVPLELPEMHTGDYYYDDTQQTTTLKSTSKPCDYKPCRHLQTECHELQRLTPCFCPGL-T 541

  Fly   745 GVLVTSVLVLIWGATRIRQTGGSSGGGGRNGDSIDSNSSSMHNNNNNSRPG 795
            |..|.....::.||:.|..|                 |:.:|....|||.|
 Frog   542 GNNVPPDPPMMQGASEITDT-----------------SAQIHWCAPNSRVG 575

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 24/86 (28%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380