DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and flrt3

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001116922.1 Gene:flrt3 / 100144692 XenbaseID:XB-GENE-490901 Length:648 Species:Xenopus tropicalis


Alignment Length:625 Identity:140/625 - (22%)
Similarity:222/625 - (35%) Gaps:199/625 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 CPNITGTRNAELECGCDLPHTLRCNIDLHGMMLLADRLRTS-PYSIS-------LLDCSLRNVTF 188
            ||::         |.||           .|.:...||..|| |..|.       |.:..:.|...
 Frog    31 CPSV---------CRCD-----------GGFIYCNDRDLTSIPSGIPDDATTLYLQNNQINNAGI 75

  Fly   189 LSDAKIFDNV--------SLHGLVIS-SGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALS 244
            .||.:..|.|        ||....|: ...:|.:|               |..|.:.::.::|||
 Frog    76 PSDLRGLDKVERIYLYRNSLDEFPINLPKNVKELH---------------LQENNIRTITYDALS 125

  Fly   245 TLSALERLDLANNKIKALGTAD--FVGLTSLVYLELSNNQISSIS---QRTFVNLRKLEVLKLGG 304
            .:.::|.|.|.:|.:.|:...|  |.....|..|.||.|.:|:|.   .||      :|.|:|..
 Frog   126 QIPSIEELHLDDNSVSAVSIEDGAFRDNIFLRLLFLSRNHLSTIPWGLPRT------IEELRLDD 184

  Fly   305 NRLGDYAQSLRSLSQCLSLRQLDLQANNL-NGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALAN 368
            ||:...|:.  ||....:|::|.|..|.| |..|.|:....:.||..|:|.||.:.|    ..||
 Frog   185 NRISTIAEI--SLQDLTNLKRLVLDGNLLNNNGLGERVFMNLINLTELSLVRNSLTS----PPAN 243

  Fly   369 F--SRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNFLR 431
            .  :.|..|.|:.|.::.:..:||..|..|..||:|.|.|.|:.......|..||.|     |||
 Frog   244 LPGTNLRKLYLQENHMNYVPPNAFADLTQLYRLDMSNNNITALPQGIFDDLDNLTQL-----FLR 303

  Fly   432 ALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRPFAEWLQESQL 496
                                                       .||..|.|.::...:|||  .|
 Frog   304 -------------------------------------------NNPWYCGCKMKWVRDWLQ--SL 323

  Fly   497 HSSLSA---SCVTPPRLEGAPLLQVPVETLSCDMDNVEKDNANIMQHLETLAKPNQ--------- 549
            .|.::.   .|..|.|:.|..:..:..|...| .|.:..:..::...:.....|.|         
 Frog   324 PSKVNVRGLMCQAPERVRGMTIKDLNKELFDC-KDRIGSNTIHVTTTVLNSLLPAQGQWPVPVTK 387

  Fly   550 --------------TSPIKDLSEEIILHELHFSTDYGLILTW-------LLNLSKKDYMCDAIFV 593
                          |:||.  .::||..::...|...:.::|       .|.||.:         
 Frog   388 QPEIRPPDINKIFRTTPIP--VKKIITIQVKSITTETIYISWKVALPMTALRLSWQ--------- 441

  Fly   594 YKEEHINEILIDNSPI--HCESKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNI 656
                      :.:||:  .....:|.|..|..::    ::||....||.|:|      |....||
 Frog   442 ----------LGHSPVFGSITETIVTGDRTEYLL----TALEPESPYRICMV------PMETGNI 486

  Fly   657 GCSNIT---------RLERSSPGAVPVSRQYQRRPYYNAN 687
            ..|:.|         .|:..:| ...::|:.::.||.|::
 Frog   487 YLSDETPVCIETETAPLKMYNP-TTTLNREQEKEPYKNSS 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 52/205 (25%)
leucine-rich repeat 179..199 CDD:275378 5/27 (19%)
leucine-rich repeat 200..223 CDD:275380 4/23 (17%)
leucine-rich repeat 225..248 CDD:275380 5/22 (23%)
LRR_8 249..307 CDD:290566 20/62 (32%)
leucine-rich repeat 249..272 CDD:275380 7/24 (29%)
LRR_RI <270..479 CDD:238064 57/214 (27%)
leucine-rich repeat 273..296 CDD:275380 9/25 (36%)
leucine-rich repeat 297..322 CDD:275380 8/24 (33%)
LRR_8 322..382 CDD:290566 21/62 (34%)
leucine-rich repeat 323..347 CDD:275380 8/24 (33%)
leucine-rich repeat 348..371 CDD:275380 8/24 (33%)
LRR_8 370..428 CDD:290566 18/57 (32%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..419 CDD:275380 8/22 (36%)
LRR_8 418..478 CDD:290566 7/59 (12%)
leucine-rich repeat 420..443 CDD:275380 6/22 (27%)
leucine-rich repeat 444..467 CDD:275380 0/22 (0%)
LRRCT 476..526 CDD:214507 14/52 (27%)
flrt3NP_001116922.1 PRK15370 <44..>305 CDD:185268 84/335 (25%)
LRR 1. /evidence=ECO:0000255 58..82 4/23 (17%)
leucine-rich repeat 61..84 CDD:275380 4/22 (18%)
LRR 2. /evidence=ECO:0000255 83..105 5/21 (24%)
leucine-rich repeat 85..105 CDD:275380 4/19 (21%)
leucine-rich repeat 106..129 CDD:275380 7/37 (19%)
LRR 3. /evidence=ECO:0000255 107..126 6/33 (18%)
LRR 4. /evidence=ECO:0000255 127..152 7/24 (29%)
leucine-rich repeat 130..155 CDD:275380 7/24 (29%)
LRR 5. /evidence=ECO:0000255 154..179 9/30 (30%)
leucine-rich repeat 156..176 CDD:275380 7/19 (37%)
leucine-rich repeat 177..200 CDD:275380 8/24 (33%)
LRR 6. /evidence=ECO:0000255 181..197 6/17 (35%)
LRR 7. /evidence=ECO:0000255 198..223 8/24 (33%)
leucine-rich repeat 201..226 CDD:275380 8/24 (33%)
LRR 8. /evidence=ECO:0000255 225..246 9/24 (38%)
leucine-rich repeat 227..248 CDD:275380 8/24 (33%)
LRR 9. /evidence=ECO:0000255 247..269 6/21 (29%)
leucine-rich repeat 249..272 CDD:275380 7/22 (32%)
LRR 10. /evidence=ECO:0000255 270..293 8/22 (36%)
leucine-rich repeat 273..296 CDD:275380 8/22 (36%)
PCC 277..>354 CDD:188093 26/126 (21%)
FN3 413..476 CDD:214495 13/85 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 624..648
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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