DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrt and LRRC70

DIOPT Version :9

Sequence 1:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_852607.3 Gene:LRRC70 / 100130733 HGNCID:35155 Length:622 Species:Homo sapiens


Alignment Length:661 Identity:143/661 - (21%)
Similarity:249/661 - (37%) Gaps:161/661 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 PYSISLLDCSLRNVTFLSDAKI----------FDNVS--------------LHGLVISSGEIKRV 213
            |.|...|..:..|:::::::::          .||.:              |:.|.:::..|||:
Human    59 PESTVFLYLTGNNISYINESELTGLHSLVALYLDNSNILYVYPKAFVQLRHLYFLFLNNNFIKRL 123

  Fly   214 HKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALERLDLANNKIKALGTADFVGLTSLVYLEL 278
            ....|.|:.. |:.|.|..|.:..||....:.|.:::.|:|..|::..||:..|||:.:|..|:|
Human   124 DPGIFKGLLN-LRNLYLQYNQVSFVPRGVFNDLVSVQYLNLQRNRLTVLGSGTFVGMVALRILDL 187

  Fly   279 SNNQISSISQRTFVNLRKLEVLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLNGPLSEQTLP 343
            |||.|..||:..|.:|..|..|.||.|.|.....:  :.....|||:|.|..|.:.. :......
Human   188 SNNNILRISESGFQHLENLACLYLGSNNLTKVPSN--AFEVLKSLRRLSLSHNPIEA-IQPFAFK 249

  Fly   344 GMRNLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVA 408
            |:.|||.|.|..:.|:::.....:..:.|..|.|.||.::.|....|..|..|..|.|..|.|::
Human   250 GLANLEYLLLKNSRIRNVTRDGFSGINNLKHLILSHNDLENLNSDTFSLLKNLIYLKLDRNRIIS 314

  Fly   409 ISSASLQHL-SRLTVLDLTHNFLRALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQ 472
            |.:.:.::: :.|.:|:|:.|.|.||...::.||.||..                        ||
Human   315 IDNDTFENMGASLKILNLSFNNLTALHPRVLKPLSSLIH------------------------LQ 355

  Fly   473 MQENPLSCDCSIRPFAEWLQESQLHSSLSASCVTPPRLEGAPLLQVPVETLSCDMDNVEKDNANI 537
            ...||..|:|.:....:||..|.:  :|:..|..||.:.|..|..:       ::.|....:.|:
Human   356 ANSNPWECNCKLLGLRDWLASSAI--TLNIYCQNPPSMRGRALRYI-------NITNCVTSSINV 411

  Fly   538 MQHLETLAKPNQTSPIKDLSEEIILHELHFSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHINEI 602
            .:....:..|:                :|..|. .|::.|                      :::
Human   412 SRAWAVVKSPH----------------IHHKTT-ALMMAW----------------------HKV 437

  Fly   603 LIDNSPIHCESKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNIGCSNITRLERS 667
            ..:.||:         :||.:                                   .|||..||.
Human   438 TTNGSPL---------ENTET-----------------------------------ENITFWERI 458

  Fly   668 SPGAVPVSRQYQRRPYYNANELKP--EVVHDAGEDYQVNQRRFNSVVGSQPQQTQQSTLLHSYTV 730
            ...  |..|.:|...:.|..|...  .|.........:|..: ||.:.:........|.|.....
Human   459 PTS--PAGRFFQENAFGNPLETTAVLPVQIQLTTSVTLNLEK-NSALPNDAASMSGKTSLICTQE 520

  Fly   731 IDSLNKSFLPGLGLGVLVTSVLV-LIWGATRIRQTGGSSGGGGRNG-------DSIDSN-SSSMH 786
            ::.||::|...|...:|...::: ||:...:.:|...:|.....|.       .|...| ::|:.
Human   521 VEKLNEAFDILLAFFILACVLIIFLIYKVVQFKQKLKASENSRENRLEYYSFYQSARYNVTASIC 585

  Fly   787 NNNNNS--RPG 795
            |.:.||  .||
Human   586 NTSPNSLESPG 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 51/184 (28%)
leucine-rich repeat 179..199 CDD:275378 4/29 (14%)
leucine-rich repeat 200..223 CDD:275380 7/22 (32%)
leucine-rich repeat 225..248 CDD:275380 7/22 (32%)
LRR_8 249..307 CDD:290566 24/57 (42%)
leucine-rich repeat 249..272 CDD:275380 8/22 (36%)
LRR_RI <270..479 CDD:238064 59/209 (28%)
leucine-rich repeat 273..296 CDD:275380 11/22 (50%)
leucine-rich repeat 297..322 CDD:275380 6/24 (25%)
LRR_8 322..382 CDD:290566 18/59 (31%)
leucine-rich repeat 323..347 CDD:275380 6/23 (26%)
leucine-rich repeat 348..371 CDD:275380 5/22 (23%)
LRR_8 370..428 CDD:290566 17/58 (29%)
leucine-rich repeat 372..395 CDD:275380 8/22 (36%)
leucine-rich repeat 396..419 CDD:275380 6/23 (26%)
LRR_8 418..478 CDD:290566 14/59 (24%)
leucine-rich repeat 420..443 CDD:275380 9/22 (41%)
leucine-rich repeat 444..467 CDD:275380 1/22 (5%)
LRRCT 476..526 CDD:214507 13/49 (27%)
LRRC70NP_852607.3 LRRNT 31..62 CDD:214470 1/2 (50%)
LRR 1 61..82 3/20 (15%)
leucine-rich repeat 65..85 CDD:275380 2/19 (11%)
LRR_8 85..144 CDD:290566 13/59 (22%)
LRR 2 85..106 2/20 (10%)
leucine-rich repeat 86..109 CDD:275380 2/22 (9%)
LRR 3 109..130 6/20 (30%)
leucine-rich repeat 110..133 CDD:275380 7/22 (32%)
LRR_8 133..192 CDD:290566 21/59 (36%)
LRR 4 133..154 6/21 (29%)
leucine-rich repeat 134..157 CDD:275380 7/22 (32%)
LRR 5 157..178 6/20 (30%)
leucine-rich repeat 158..181 CDD:275380 8/22 (36%)
LRR_RI <159..340 CDD:238064 57/183 (31%)
LRR 6 181..202 10/20 (50%)
LRR_8 182..240 CDD:290566 23/59 (39%)
leucine-rich repeat 182..205 CDD:275380 11/22 (50%)
LRR 7 205..226 6/22 (27%)
leucine-rich repeat 206..229 CDD:275380 6/24 (25%)
LRR_8 228..288 CDD:290566 18/60 (30%)
LRR 8 229..250 6/21 (29%)
leucine-rich repeat 230..253 CDD:275380 6/23 (26%)
LRR 9 253..274 6/20 (30%)
leucine-rich repeat 254..277 CDD:275380 5/22 (23%)
LRR_8 277..337 CDD:290566 18/59 (31%)
LRR 10 277..298 7/20 (35%)
leucine-rich repeat 278..301 CDD:275380 8/22 (36%)
LRR 11 301..322 6/20 (30%)
leucine-rich repeat 302..326 CDD:275380 6/23 (26%)
LRR 12 326..347 7/20 (35%)
leucine-rich repeat 327..348 CDD:275380 7/20 (35%)
LRRCT 359..398 CDD:214507 13/40 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
21.870

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