DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and AT4G34380

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_195164.1 Gene:AT4G34380 / 829588 AraportID:AT4G34380 Length:495 Species:Arabidopsis thaliana


Alignment Length:464 Identity:85/464 - (18%)
Similarity:155/464 - (33%) Gaps:149/464 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   502 WSVEF------ERKMLRYKISKDKSHSCHLQ---DIVSFACDSSKEMIWLCRNNRQIGMMNPKTG 557
            |..:|      |...|...|.:.:.|...|.   |::....||....:|  :|.::.......:|
plant   102 WGADFNEDNVLETNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVW--KNLKEHAGFKSSSG 164

  Fly   558 RMADFYGTVAFGVRAMAECPDDMNKIALGCSDRRVAFFDISK------LTTSCLPIDSVYVSSNV 616
            .:.   ..|.||           ::|..|..|.::..:.:||      .....||.....|.|:|
plant   165 LIK---AIVIFG-----------DRIFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSV 215

  Fly   617 YCLAWSPNCLELAFGTFDGTVGILDVERMKVKTHLRTPHKKEV------------YSLVWQDHFI 669
                 :|.             ..::|.|.  :..::|.|...|            ||..|     
plant   216 -----NPK-------------HFMEVRRN--RNSVKTKHNDAVSSLSLDVELGLLYSSSW----- 255

  Fly   670 YFIVNRVLGFFDLRKSKIEPTI------VNCISRPSYLSIRDSFLFVGTDDGLLQIHERD---SG 725
                :..:..:.:..||...:|      :|     |.:|..|..:|.|:.||.:::.:|:   .|
plant   256 ----DTTIKVWRIADSKCLESIHAHDDAIN-----SVMSGFDDLVFTGSADGTVKVWKRELQGKG 311

  Fly   726 MEKSWSPFIRQ-----SALFARYVTDIAWCPLDSNKFAVSGNDRSVYVMEFQPTERNWKTLHTFT 785
            .:.:.:..:.:     :||..:..:.|.:|         ..:|..|...|        ::..:||
plant   312 TKHTLAQVLLKQENAVTALAVKSQSSIVYC---------GSSDGLVNYWE--------RSKRSFT 359

  Fly   786 ANTEKASITSMRWSHTQKHLLLTFHIEGKVCLWNCNAPEKPPLTITYHC---------PMWCGMF 841
            ....|...:::.......:|||:...:..:|:|..:..:|     ::.|         |:.|   
plant   360 GGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDK-----SHQCLSVLTGHMGPVKC--- 416

  Fly   842 LPTNENIIMCSGKALSVELIDIKDALEGDEKSICPKVDALLNVK----------WASKSLTQPYA 896
            |...|......|...||        .|||.|.|........:||          |  |.:.:|.|
plant   417 LAVEEERACHQGAKASV--------AEGDRKWIIYSGSLDKSVKVWRVSERMATW--KEMDEPAA 471

  Fly   897 PVLTAAEKK 905
                ::|:|
plant   472 ----SSERK 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 446..719 CDD:475233 46/249 (18%)
WD40 613..874 CDD:475233 52/295 (18%)
WD40 repeat 617..654 CDD:293791 3/36 (8%)
WD40 repeat 659..691 CDD:293791 6/43 (14%)
WD40 repeat 693..732 CDD:293791 10/41 (24%)
WD40 repeat 744..785 CDD:293791 5/40 (13%)
WD40 repeat 793..831 CDD:293791 6/37 (16%)
WD40 repeat 838..861 CDD:293791 6/22 (27%)
AT4G34380NP_195164.1 WD40 125..455 CDD:238121 74/412 (18%)
WD40 repeat 131..161 CDD:293791 6/31 (19%)
WD40 repeat 166..205 CDD:293791 8/52 (15%)
WD40 repeat 239..274 CDD:293791 5/43 (12%)
WD40 repeat 280..319 CDD:293791 10/43 (23%)
WD40 repeat 327..364 CDD:293791 9/53 (17%)
WD40 repeat 370..392 CDD:293791 4/21 (19%)
Blue background indicates that the domain is not in the aligned region.

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