DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and VIP3

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_194712.1 Gene:VIP3 / 829105 AraportID:AT4G29830 Length:321 Species:Arabidopsis thaliana


Alignment Length:380 Identity:78/380 - (20%)
Similarity:120/380 - (31%) Gaps:154/380 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   435 LTSVNSTHLET---------------LLVSIDGDEVMMIW--------NTNTG---------AHA 467
            |.|:.:.|.::               ||::...||.:.:|        .||||         ||.
plant     6 LKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHP 70

  Fly   468 GKNYSKSKTAGKLNNVYWLN-NHVIVSLSRHQLFFWSVEFERKMLRYKISKDKSHSCHLQDIVSF 531
            ....:.|.:......|:.:: |..|..|.......|.::||.|.....::...|.|..|.|..| 
plant    71 SGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTAS- 134

  Fly   532 ACDSSKEMIWLCRNNRQIGMMN-PKTGRMADFYGTVAFGVRAMAECPDDMNKIALGCSDRRVAFF 595
                     |     |.|..:: |:                     ||                 
plant   135 ---------W-----RLISTLSIPR---------------------PD----------------- 147

  Fly   596 DISKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAFGTFDGTVGILDVERMKVKTHLRTPHKKEVY 660
                   :..|.|.......|..:|||||...||.|:.|||:.:.||:|.|: .|....|...|.
plant   148 -------APKPSDKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKL-LHQLEGHNMPVR 204

  Fly   661 SLVWQDHFIYFIVNRVLGFFDLRKSKIEPTIVNCISRPSYLSIRDSFLFVGTDDGLLQIHERD-- 723
            |||:                    |.::|.:                ||.|:|||.:.:|:.:  
plant   205 SLVF--------------------SPVDPRV----------------LFSGSDDGHVNMHDAEGK 233

  Fly   724 ------SGMEKSWSPFIRQSALFARYVTDIAWCPLDSNKFAVSGNDRSVYVMEFQ 772
                  || ..||             |..:...| |....|...:||:|.:.:.:
plant   234 TLLGSMSG-HTSW-------------VLSVDASP-DGGAIATGSSDRTVRLWDLK 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 446..719 CDD:475233 63/291 (22%)
WD40 613..874 CDD:475233 42/168 (25%)
WD40 repeat 617..654 CDD:293791 16/36 (44%)
WD40 repeat 659..691 CDD:293791 6/31 (19%)
WD40 repeat 693..732 CDD:293791 11/46 (24%)
WD40 repeat 744..785 CDD:293791 7/29 (24%)
WD40 repeat 793..831 CDD:293791
WD40 repeat 838..861 CDD:293791
VIP3NP_194712.1 WD40 <12..319 CDD:441893 76/374 (20%)
WD40 repeat 17..58 CDD:293791 7/40 (18%)
WD40 repeat 64..102 CDD:293791 7/37 (19%)
WD40 repeat 105..142 CDD:293791 12/51 (24%)
WD40 repeat 162..197 CDD:293791 16/35 (46%)
WD40 repeat 203..240 CDD:293791 13/72 (18%)
WD40 repeat 246..282 CDD:293791 7/29 (24%)
WD40 repeat 288..318 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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