DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rig and AT3G18950

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_188525.1 Gene:AT3G18950 / 821427 AraportID:AT3G18950 Length:473 Species:Arabidopsis thaliana


Alignment Length:552 Identity:97/552 - (17%)
Similarity:176/552 - (31%) Gaps:196/552 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   322 LLASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTISNKNDASDSTEGSLEVIQYSSSSDDAVIVD 386
            ::|:.....:.|..:|.               ::..|.:.|:|..|.|..|        |.:|..
plant     2 VIATETTSSSHHRRLTF---------------ASFLNSDPAADEEEQSHGV--------DDIINP 43

  Fly   387 GEAAKPKREVLHHIYHQAEVHASGTPQTKSEPQSNLQVVPAISAETISLTSVNSTHLETLLVSID 451
            ..:.|...:.:||.|.|::.:|| |...:|.|                                 
plant    44 SSSNKNINKDVHHNYRQSQSNAS-TTSGESSP--------------------------------- 74

  Fly   452 GDEVMMIWN-TNTGAHAGKNYSKSKTAGKLNNVY-------WL----------NNHVIVSLSRHQ 498
             ::|:..|| |.:..:.....:.|.:....|..|       |:          :|.:|.::.|..
plant    75 -NQVLSPWNQTYSPYYTDTTNTPSMSPSPWNQTYSPYYKSPWIYQTRNIDDDTDNGLIGTIVRQD 138

  Fly   499 LFFWSVEFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFY 563
            ...:|:...                  .|::....||....:|        ..:...||    |.
plant   139 GHVYSLAAS------------------GDLLFTGSDSKNIRVW--------KDLKDHTG----FK 173

  Fly   564 GTVAFGVRAMAECPDDMNKIALGCSDRRVAFFDISKLTT------SCLPIDSVYVSSNVYCLAWS 622
            .|... |:|:....|  |:|..|..|.::..:..||..|      ..||....:::.:|     :
plant   174 STSGL-VKAIVITGD--NRIFTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSV-----N 230

  Fly   623 PNCLELAFGTFDGTVGILDVERMKVKTHLRTPHKKEV------------YSLVWQDHFIYFIVNR 675
            |.             ..::|.|.  |..|:..|...|            ||..|         ::
plant   231 PK-------------NYVEVRRR--KNVLKIRHYDAVSCLSLNEELGLLYSGSW---------DK 271

  Fly   676 VLGFFDLRKSKIEPTI------VNCISRPSYLSIRDSFLFVGTDDGLLQIHERDSGMEKSWSPFI 734
            .|..:.|..||...:|      :|.::...     |..||.|:.||.|::.:|:. ..|....|:
plant   272 TLKVWRLSDSKCLESIQAHDDAINTVAAGF-----DDLLFTGSADGTLKVWKREL-QGKGTKHFL 330

  Fly   735 -----RQ----SALFARYVTDIAWCPLDSNKFAVSGNDRSVYVMEFQPTERNWKTL-HTFTANTE 789
                 :|    :||.......:.:|         ..:|.:|...|.|      |.| |..|....
plant   331 VNVLMKQENAVTALAVNITAAVVYC---------GSSDGTVNFWEGQ------KYLSHGGTLRGH 380

  Fly   790 KASITSMRWSHTQKHLLLTFHIEGKVCLWNCN 821
            :.::..:..:.:   |:|:...:..:|:|..|
plant   381 RLAVLCLAAAGS---LVLSGGADKNICVWRRN 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 446..719 CDD:475233 56/314 (18%)
WD40 613..874 CDD:475233 44/237 (19%)
WD40 repeat 617..654 CDD:293791 5/36 (14%)
WD40 repeat 659..691 CDD:293791 8/43 (19%)
WD40 repeat 693..732 CDD:293791 10/38 (26%)
WD40 repeat 744..785 CDD:293791 8/41 (20%)
WD40 repeat 793..831 CDD:293791 5/29 (17%)
WD40 repeat 838..861 CDD:293791
AT3G18950NP_188525.1 WD40 130..463 CDD:475233 67/366 (18%)
WD40 repeat 179..245 CDD:293791 17/87 (20%)
WD40 repeat 253..288 CDD:293791 7/43 (16%)
WD40 repeat 294..330 CDD:293791 10/41 (24%)
WD40 repeat 341..378 CDD:293791 11/51 (22%)
WD40 repeat 384..406 CDD:293791 3/24 (13%)
WD40 repeat 427..462 CDD:293791
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.