DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and SKIC8

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_079510.1 Gene:SKIC8 / 80349 HGNCID:30300 Length:305 Species:Homo sapiens


Alignment Length:364 Identity:79/364 - (21%)
Similarity:126/364 - (34%) Gaps:149/364 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 IWNTNTGAHAGKNYSKSKTAGKLNNVY----WLNNHVIV--SLSRHQLFFWSVEFERKMLRYKIS 516
            ||:...|.:..:| |::...|.|:::.    |.:..:.:  ||..|||...||:....:   .|:
Human    19 IWSVAWGTNKKEN-SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL---PIA 79

  Fly   517 KDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFGVRAMAECPDDMN 581
            ...|...|::             :|...|.:||                               .
Human    80 ASSSLDAHIR-------------LWDLENGKQI-------------------------------K 100

  Fly   582 KIALGCSDRRVAFFDISKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAFGTFDGTVGILDVERMK 646
            .|..|                   |:|:       :.||:||:...||.||..|.|.|..||   
Human   101 SIDAG-------------------PVDA-------WTLAFSPDSQYLATGTHVGKVNIFGVE--- 136

  Fly   647 VKTHLRTPHKKEVYSLVWQDHFIYFI-------------VNRVLGFFDLRKSKIEPTIVNCISRP 698
                   ..||| |||..:..||..|             ::.::..||:...|:..|:     ..
Human   137 -------SGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-----EG 188

  Fly   699 SYLSIR------DSFLFV-GTDDGLLQIHERDSGMEKSWSPFIRQSAL------FARYVTDIAWC 750
            ..:.||      ||.|.| .:|||.::|::            ::.:.|      .|.:|.::|:|
Human   189 HAMPIRSLTFSPDSQLLVTASDDGYIKIYD------------VQHANLAGTLSGHASWVLNVAFC 241

  Fly   751 PLDSNKFAVSGNDRSVYVMEFQPTERNWKT-----LHTF 784
            | |...|..|.:|:||.|         |..     :|||
Human   242 P-DDTHFVSSSSDKSVKV---------WDVGTRTCVHTF 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 446..719 CDD:475233 61/286 (21%)
WD40 613..874 CDD:475233 53/203 (26%)
WD40 repeat 617..654 CDD:293791 13/36 (36%)
WD40 repeat 659..691 CDD:293791 9/44 (20%)
WD40 repeat 693..732 CDD:293791 10/45 (22%)
WD40 repeat 744..785 CDD:293791 15/46 (33%)
WD40 repeat 793..831 CDD:293791
WD40 repeat 838..861 CDD:293791
SKIC8NP_079510.1 WD40 <6..302 CDD:441893 79/364 (22%)
WD 1 14..57 8/38 (21%)
WD40 repeat 19..62 CDD:293791 10/43 (23%)
WD 2 62..101 12/85 (14%)
WD40 repeat 68..105 CDD:293791 10/83 (12%)
WD 3 104..143 19/75 (25%)
WD40 repeat 110..146 CDD:293791 19/46 (41%)
WD 4 146..187 7/45 (16%)
WD40 repeat 152..188 CDD:293791 5/40 (13%)
WD 5 188..227 11/50 (22%)
WD40 repeat 193..229 CDD:293791 11/47 (23%)
WD 6 230..269 13/48 (27%)
WD40 repeat 236..271 CDD:293791 14/45 (31%)
WD 7 272..305
Blue background indicates that the domain is not in the aligned region.

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