DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rig and gemin5

DIOPT Version :9

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:XP_001339880.4 Gene:gemin5 / 799538 ZFINID:ZDB-GENE-031112-9 Length:1440 Species:Danio rerio


Alignment Length:1336 Identity:253/1336 - (18%)
Similarity:428/1336 - (32%) Gaps:480/1336 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 INYISAPPA-NGEQPQVVTMSTRINILALDVSPMWGLGNGGPTKPFAIVGDDLSVQVWDCALGEA 99
            :|..:|.|| .||   :...:.|::..|.       ..|.|.........||..|::||......
Zfish    37 LNVTAASPAVTGE---LAGHTERVSGFAF-------CPNEGQEHICCSTSDDKKVKIWDAEQKIL 91

  Fly   100 VIGHKAHQHQHEARDVRVVHHTTNSVLMSYLANGNILSMDASDLVIYCVASNTYCRRSTFISPRN 164
            :..|..||:     .:..||.:....|:  |..|:    :...:|.|..:||.  .:|.|..||.
Zfish    92 LKEHNVHQN-----TITAVHWSPVQKLL--LVTGD----EKGIVVCYWFSSND--TQSFFPEPRT 143

  Fly   165 HQLTMVRCSPYNDNLFAVGTAMGNVLVCDL-RKMNIVYKFHGHKAPICGLAWREVPAAEDEKTNN 228
              :..:.|||:::||.|||...|.:.|.|: :|..:|::..||...|..|||             
Zfish   144 --IFCLSCSPHDENLIAVGYKDGMIAVIDISKKGEVVHRLRGHDDEIHALAW------------- 193

  Fly   229 LALSAEEWRSRNGGQEEKPKTKPPPLTKSKAAESDDPFDIYNFDHLEYEFGAPIAERRRKSSEDC 293
                                                                             
Zfish   194 ----------------------------------------------------------------- 193

  Fly   294 GGEFVGLEKPAGAAVLDFVEACESVKAELLASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTISN 358
                                 |...:.|.|..|.||                            |
Zfish   194 ---------------------CPRPREEPLYGRSED----------------------------N 209

  Fly   359 KNDASDSTEGSLEVIQYSSSSDDAVIVDGEAAKPKREVLHHIYHQAEVHASGTPQTKSEPQSNLQ 423
            .:.:|..|||:                  ||.                                 
Zfish   210 ADGSSGVTEGA------------------EAG--------------------------------- 223

  Fly   424 VVPAISAETISLTSVNSTHLETLLVSIDGDEVMMIWNT--NTGAHAGK-NYSKSKTAG---KLNN 482
                                 ..|.|...|:.|.||:|  ..|....| .:.|.:.||   .:..
Zfish   224 ---------------------CYLASGSRDQTMRIWSTARRKGVMTLKLPFLKRRGAGVDPTVKE 267

  Fly   483 VYWLNNH--------VIVSLSRHQLFFWSVEFERKM---LRYKISKDKSHSCHLQDIVSFACDSS 536
            ..||..|        ::.|....::..|.:....|.   |....|..::||..:.::.||.| ..
Zfish   268 RLWLTVHWPKERPSQIVSSCFGGEIVVWDLMKSGKQKWSLLGSSSDGQNHSRIVFNMSSFRC-GD 331

  Fly   537 KEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFGVRAMAECPDDMNKIALGCSDRRVAFFDISKLT 601
            :|::.....:|:|...:.::........|:...|..::..|.....:|||..|..:..:      
Zfish   332 RELLLSTSMDREIKCWDLESLECCWTLPTLGGFVYCLSFSPVGTGCLALGVGDSMIRVW------ 390

  Fly   602 TSCLPIDSVY--------VSSNVYCLAWSPNCLE---LAFGTFDGTVGILDVERMKVKTHLRTPH 655
             :.|.|.:.|        :.|.|..|||.|  |:   |||||.||.|||.:|...:......|.|
Zfish   391 -NTLSIQNQYDIKTFWQGIKSKVTALAWHP--LKEGSLAFGTDDGKVGIYEVYSNRPPQISSTYH 452

  Fly   656 KKEVYSLVW------------QDHFIYFIVN----RVLGFFDLRKSKIEPTIVNCISR------- 697
            ::.||||.|            .|...|.:.:    .|:...|..|...|.:.::.:.|       
Zfish   453 RRTVYSLSWGPPLPPMSFGGAGDKPAYSLYSCAGEGVIFQHDPWKLSGEASNIDKLIRDTNNIKH 517

  Fly   698 --PSYLSIR----DSFLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFARY---VTDIAWCPLD 753
              |.:..:.    .|.|.:|.:||.:::.:         :|.::......::   :..:.|....
Zfish   518 KMPPHTDLSWKPDGSILAIGNEDGSIEVLK---------APMLKLLCTVQQHHKIINSLRWHHQH 573

  Fly   754 SNK------FAVSGNDRSVYVMEFQ-----PTERN---WKTLHTFTANTEKASITSMRWS-HTQK 803
            |::      .|...::.::|:.:.:     |:|..   .:...|.:.:|.|  ||.:.|| |...
Zfish   574 SSQNELQYLLASGSSNATIYIHDLRSAVESPSESPVSVTEPFRTLSGHTNK--ITDLAWSPHHDG 636

  Fly   804 HLLLTFHIEGKVCLWNCNAPEKPPLTITYH-----CPMWCGMFLPTNENIIMCSGKALSVELIDI 863
            | |:|...:|...:|:. ..|:|......|     |..|..:    :.::|...|...:::    
Zfish   637 H-LVTVCYDGTAQVWDV-LKEEPVCNYRGHSGRLLCVQWSAV----HPDLIWTGGDDFTLQ---- 691

  Fly   864 KDALEGDEKSICPKVDALLNVKWA---SKSLTQPYAPVLTAAEKKR--QRRDQRKAAAKLEVDVA 923
                                 :||   .:.:|.|.:...|..||||  |::.::|..|      .
Zfish   692 ---------------------EWAVSKQEHITPPKSKKRTEMEKKRVPQKKPKKKKKA------P 729

  Fly   924 NKDQKKIQESVTAVIDNPTNDKCTQETPVEEMLEALS----------LDKEQNNRSAKECPKCKE 978
            .|...|.:||               |.|:.|.::..:          .::|:..:...:.|....
Zfish   730 GKGGMKAEES---------------EMPLGEEVKGAAGSGAEEGQSDNEEEEEEKEYTDAPSVTG 779

  Fly   979 QSPDSFTHSRTCLYLTQKELNKSALEKLAIVLTEDSAKIDKSVLISKLFSSKVMAKELIATELTN 1043
            :|.||...:|....|...|...:|::|    ..::..|.||..|     |.|......|....|:
Zfish   780 RSRDSSVDTRASDRLHNGEKFSNAVKK----EVKEEKKRDKIDL-----SLKKRKPRSILPLSTS 835

  Fly  1044 LKHSNTKDIAPLCLAMSTFK-------------------------------LREELEQHI----- 1072
            :.|....::...||.::..:                               ::||.|.|:     
Zfish   836 MDHRPKDELQQDCLTLAAVRHSHGRSRTCVPGAGDHIQLGLFTDRDALYRMMQEEEESHVEAAHY 900

  Fly  1073 ---------------------ANKTLTERHVSLAPSVSFTLWQDCCRAYAKQMEEKGYIMHAATY 1116
                                 ....||:..:||||...:.:|.....||.||:......:.||::
Zfish   901 DSVLYLRLWRGDLIGALNLAMEKGELTDHLLSLAPMAGYQVWLRTVEAYVKQLCHHEQFLKAASH 965

  Fly  1117 LFSQGMQSEAIKLFLANEYYKEALVHARICLPATDPLIKTVINNWLEHLEGTGNFAAAALICVLD 1181
            |.|.....|||.|..::::|:||:..||..|...||::|.:..:|...||..|::|.||. |.|.
Zfish   966 LLSIHKLYEAISLLKSHQFYREAIALARARLQPEDPVLKDLYMSWAAVLEKDGHYATAAK-CYLA 1029

  Fly  1182 NEMLRGYSYLRKYRNCTPEIADLMDQIKRIGQLGGV 1217
            .:                   ...|..|.||:.|.|
Zfish  1030 TD-------------------SSFDAAKVIGKKGDV 1046

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 <80..>215 CDD:295369 38/135 (28%)
WD40 80..>215 CDD:225201 38/135 (28%)
WD40 repeat 116..160 CDD:293791 10/43 (23%)
WD40 repeat 167..204 CDD:293791 13/37 (35%)
WD40 434..821 CDD:225201 96/461 (21%)
WD40 446..719 CDD:295369 76/329 (23%)
WD40 613..874 CDD:295369 65/315 (21%)
WD40 repeat 617..654 CDD:293791 16/39 (41%)
WD40 repeat 659..691 CDD:293791 11/47 (23%)
WD40 repeat 693..732 CDD:293791 7/51 (14%)
WD40 repeat 744..785 CDD:293791 7/54 (13%)
WD40 repeat 793..831 CDD:293791 12/38 (32%)
WD40 repeat 838..861 CDD:293791 2/22 (9%)
gemin5XP_001339880.4 WD40 17..449 CDD:225201 119/645 (18%)
WD40 47..391 CDD:295369 94/575 (16%)
WD40 repeat 57..94 CDD:293791 8/43 (19%)
WD40 repeat 102..139 CDD:293791 10/44 (23%)
WD40 repeat 145..183 CDD:293791 13/37 (35%)
WD40 repeat 188..263 CDD:293791 29/273 (11%)
WD40 repeat 271..313 CDD:293791 6/41 (15%)
WD40 281..710 CDD:225201 92/480 (19%)
WD40 repeat 320..357 CDD:293791 6/37 (16%)
WD40 331..694 CDD:295369 78/413 (19%)
WD40 repeat 365..405 CDD:293791 9/46 (20%)
WD40 repeat 412..437 CDD:293791 15/26 (58%)
WD40 repeat 456..558 CDD:293791 19/110 (17%)
WD40 repeat 564..619 CDD:293791 7/54 (13%)
WD40 repeat 625..650 CDD:293791 9/25 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 87 1.000 Inparanoid score I5123
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D283127at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106770
Panther 1 1.100 - - LDO PTHR46362
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.970

Return to query results.
Submit another query.