DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rig and Wdsub1

DIOPT Version :9

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001366327.1 Gene:Wdsub1 / 72137 MGIID:1919387 Length:475 Species:Mus musculus


Alignment Length:679 Identity:115/679 - (16%)
Similarity:200/679 - (29%) Gaps:307/679 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   570 VRAMAECPDDMNKIALG------CS-DRRVAFFDISKLTTSCLPIDSV-YVSSNVYCLAWSPNCL 626
            :..:|:..||::..|..      || |:.:..:.:|....  ||...: :.:..|:|..:||:..
Mouse     5 IHTLADHGDDVSCCAFSAALLATCSLDKTIRLYSLSDFAE--LPYSPLKFHTYAVHCCCFSPSGH 67

  Fly   627 ELAFGTFDGTVGILDVERMKVKTHLRTPHKKEVYSLVWQDHFIYFIVNRVLGFFDLRKSKIEPTI 691
            .||..:.|||                        :::|..|..:.:.       .|.:....|..
Mouse    68 VLASCSTDGT------------------------TVLWSSHSGHTLT-------VLEQPGGSPVR 101

  Fly   692 VNCISRPSYLSIRDSFLFVGTDDGLLQIHERDSGMEKSWSP---------FIRQSALFARYVTDI 747
            |.|.|..|      ::|..|..||.:.:          |:.         .::.|:|.|     .
Mouse   102 VCCFSPDS------AYLASGAADGSIAL----------WNAQTYKLYRCGSVKDSSLVA-----C 145

  Fly   748 AWCPLDSNKFAV--SGNDRSVYVMEFQPTERNWKTLHTFTANTEKA---SITSMRWSH------- 800
            |:.| |...|..  ||.|.:|:       :...:.||     :|||   .||...:|.       
Mouse   146 AFSP-DGGLFVTGSSGGDLTVW-------DDRMRCLH-----SEKAHDLGITCCSFSSQPLSGGE 197

  Fly   801 -TQKHLLLTFHIEGKVCLWNCNAPEKPPLTITYHCPMWCGMFLPTNENIIMCSGKALSVELIDIK 864
             .|.:.|.:...:.::.||        .:|||                      :.|..|| ..|
Mouse   198 GLQSYQLASCGQDCEIKLW--------AVTIT----------------------RVLGFEL-KYK 231

  Fly   865 DALEGDEKSICPKVDALLNVKWASKSLTQPYAPVLTAAEKKRQRRDQRKAAAKLEVDVANKDQKK 929
            ..|.|.    |                    ||||..|                           
Mouse   232 STLSGH----C--------------------APVLACA--------------------------- 245

  Fly   930 IQESVTAVIDNPTNDKCTQETPVEEMLEALSLDKEQNNRSAKECPKCKEQSPDSFTHSRTCLYLT 994
                                                                  |:|....|   
Mouse   246 ------------------------------------------------------FSHDGKML--- 253

  Fly   995 QKELNKSALEKLAIVLTEDSAKIDKSVLISKLFSSKVMAKELIATELTNLKHSNTKDIAPLCLAM 1059
                              .|..:||||:|..:....|     :.|...:.::..|...||..|.:
Mouse   254 ------------------ASGSVDKSVIIHGIGPQSV-----LHTLTQHTRYVTTCAFAPNTLLL 295

  Fly  1060 STFKLREELEQHIANKTLTERHVSLAPSVSFTLWQ----DCCRAYA-----KQMEEKGYIMHAAT 1115
            :|..:         :||:             .:||    ..|:|.:     |...|:......:.
Mouse   296 ATGSM---------DKTV-------------NIWQFDLETPCQAGSMNDPLKHFTEEWSEEDVSV 338

  Fly  1116 YLFSQGMQSEAIKLFLANEYYKEALVHARICLPATDPLIKTV-----INNWLEHLEGTGNFAAAA 1175
            :|.:||:: :.:.:|.||....:.|:|......|.|..|:::     :...:|.|....:..::.
Mouse   339 WLRAQGLE-DLVGIFRANNIDGKELLHLTKESLAGDLKIESLGLRSKVLRSIEELRAKMDSLSSG 402

  Fly  1176 L----ICVLDNEMLR-------GYSYLRK 1193
            :    ||.:..|:::       ||||.|:
Mouse   403 IPDEFICPITRELMKDPVIASDGYSYERE 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 <80..>215 CDD:295369
WD40 80..>215 CDD:225201
WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 434..821 CDD:225201 55/280 (20%)
WD40 446..719 CDD:295369 31/156 (20%)
WD40 613..874 CDD:295369 54/282 (19%)
WD40 repeat 617..654 CDD:293791 8/36 (22%)
WD40 repeat 659..691 CDD:293791 4/31 (13%)
WD40 repeat 693..732 CDD:293791 8/38 (21%)
WD40 repeat 744..785 CDD:293791 10/42 (24%)
WD40 repeat 793..831 CDD:293791 8/45 (18%)
WD40 repeat 838..861 CDD:293791 2/22 (9%)
Wdsub1NP_001366327.1 WD40 4..308 CDD:238121 88/553 (16%)
WD 1 10..47 8/38 (21%)
WD40 repeat 16..52 CDD:293791 7/37 (19%)
WD 2 52..91 11/69 (16%)
WD40 repeat 57..93 CDD:293791 11/66 (17%)
WD 3 95..134 10/54 (19%)
WD40 repeat 101..136 CDD:293791 9/50 (18%)
WD 4 137..176 13/56 (23%)
WD40 repeat 143..177 CDD:293791 11/51 (22%)
WD 5 178..227 12/78 (15%)
WD40 repeat 183..235 CDD:293791 14/82 (17%)
WD 6 236..275 17/169 (10%)
WD40 repeat 241..264 CDD:293791 11/124 (9%)
WD40 repeat 283..307 CDD:293791 7/45 (16%)
SAM_WDSUB1 327..398 CDD:188904 14/71 (20%)
U-box 403..475 CDD:398320 8/29 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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