DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and Gemin5

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:XP_006246458.1 Gene:Gemin5 / 691231 RGDID:1586275 Length:1498 Species:Rattus norvegicus


Alignment Length:1280 Identity:267/1280 - (20%)
Similarity:448/1280 - (35%) Gaps:392/1280 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 CINYISAPPANGEQPQVVTMSTRINILALDVSPMWGLGNGGPTKPFAIVG--------------- 84
            |.....|.|..     :...:.|.::..:.|.|..|...|.|  ||.:||               
  Rat    16 CARCSDAAPGG-----IFGFAARTSVFLVRVGPGAGASPGAP--PFRVVGELVGHTERVSGFTFS 73

  Fly    85 -------------DDLSVQVWDCALGEAVIGHKAHQHQHEARDVRVVHHTTNSVLMSYLANGNIL 136
                         ||.:|::||......|..|..||            ||.:::..|......|:
  Rat    74 HHPGQYNLCATSSDDGTVKIWDVETKAVVTEHALHQ------------HTISALHWSPTVKDLIV 126

  Fly   137 SMDASDLVIYCVASNTYCRRSTFISPRNHQLTMVRCSPYNDNLFAVGTAMGNVLVCDL-RKMNIV 200
            |.|... |::|...|....:..|..||  .:..:.|||:::||.|:|...|.|::.|: :|..:|
  Rat   127 SGDEKG-VVFCYWLNRSDSQHLFTEPR--AIFCLTCSPHHENLVAIGYKDGIVIIIDISKKGEVV 188

  Fly   201 YKFHGHKAPICGLAWREVPAAEDEKTNNLALSAEEWRSRNGGQEEKPKTKPPPLTKSKAAESDDP 265
            ::..||...|..:||             ..||.|:..|.|  |||               .|::|
  Rat   189 HRLRGHDDEIHSIAW-------------CPLSGEDCLSIN--QEE---------------NSEEP 223

  Fly   266 FDIYNFDHLEYEFGAPIAERRRKSSEDCGGEFVGLEKPAGAAVLDFVEACESVKAELLASRQEDK 330
             ||.|        |..|||                        ....:.|      .||:..:|:
  Rat   224 -DIPN--------GKLIAE------------------------TPITKGC------YLATGSKDQ 249

  Fly   331 TQHVEVTLHDCEPTKPTGPLSDASTISNKNDASDSTEGSLEVIQYSSSSDDAVIVDGEAAKPKRE 395
            |    :.:..|...:....|                  .|..::..|...|..:         :|
  Rat   250 T----IRIWSCSRGRGVMVL------------------KLPFLKRRSGGVDPTV---------KE 283

  Fly   396 VLHHIYHQAEVHASGTPQTKSEPQSNLQVVPAISAETISLTSVNSTHLETLLVSIDGDEVMMIWN 460
            .|....|          ..|::|..                         |:.|..|.| :::|:
  Rat   284 RLWLTLH----------WPKNQPTQ-------------------------LVSSCFGGE-LLLWD 312

  Fly   461 TNTGAHAGKNYSKSKTAGKLNNVYWLNNHVIVSLSRHQLFFWSVEFERKMLRYKISKDKSHSCHL 525
            ......  :.|:...|:.:.:|    ::.::.:|...:      ..:.|.|....|.|:...|  
  Rat   313 LTQSWR--RKYTLFSTSAEGHN----HSRIVFNLCPLK------TEDGKQLLLSTSMDRDVKC-- 363

  Fly   526 QDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFGVRAMAECPDDMNKIALGCSDR 590
            .|:.:..|      .|..          |..|..|          .::|..|.|:..:|:|..|.
  Rat   364 WDMATLEC------CWTL----------PSLGGFA----------YSLAFSPVDVGSLAIGVGDG 402

  Fly   591 RVAFFDISKLTTSCLPIDSVY--------VSSNVYCLAWSPN---CLELAFGTFDGTVGILDVER 644
            .:..:       :.|.|.:.|        |.|.|..|.|.||   |  |||||.||.||:.|...
  Rat   403 MIRVW-------NTLSIKNNYDVKNFWQGVKSKVTALCWHPNKEGC--LAFGTDDGKVGLYDTCS 458

  Fly   645 MKVKTHLRTPHKKEVYSLVW-----------------------------QDHFIYFIVNRVLGFF 680
            .|......|.|||.||.|.|                             ..|..:.:....   |
  Rat   459 NKPPQISSTYHKKTVYRLAWGPPVPPMSLGGEGDRPSLTLYSCGGEGIVLQHNPWKLSGEA---F 520

  Fly   681 DLRKSKIEPTIVNCISRPSYLSIR----DSFLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFA 741
            |:.|...:...:. ...|.:..|.    ...:.:|.:||.::|.:         .|.::......
  Rat   521 DINKLMRDTNSIR-YKLPVHTEISWKGDGKVMALGNEDGSIEIFQ---------VPNLKLLCTIQ 575

  Fly   742 RY---VTDIAW------CPLDSNKFAVSGNDRSVY------VMEFQP------TERNWKTL--HT 783
            ::   |..|.|      .|..|...|...|:..:|      |:|..|      || .::||  ||
  Rat   576 QHHKLVNAIVWHHEHGSRPELSCLLASGSNNAVIYVHNLKAVLESNPESPITITE-PYRTLSGHT 639

  Fly   784 FTANTEKASITSMRWSHTQKHLLLTFHIEGKVCLWNCNAPEKPPLTITYH-----CPMWCGMFLP 843
                   |.:||:.||......|::...:|...:|:. ..|:|......|     |..|.    |
  Rat   640 -------AKVTSLAWSPHHDGRLVSACYDGTAQVWDA-LREEPLFNFRGHRGRLLCVAWS----P 692

  Fly   844 TNENIIMCSGKALSVE--LIDIKDALEGDEKSICPKVDALLNVKWASKSLTQPYAPVLTAAEKKR 906
            .:...|........|.  |..::|.....:...|        ::...|.|:| :.|.|     |:
  Rat   693 VDPECIYSGADDFCVYRWLTSMQDHSRPPQGKKC--------IELEKKRLSQ-FKPKL-----KK 743

  Fly   907 QRRDQRKAAAKLEVDVANKDQKKIQESVTAVIDNPTNDKCTQETPVEEML-------------EA 958
            :::...:...|.:..:.|:|: .::|:: |.::|..:|:..:|...|..|             .|
  Rat   744 KKKPTLRLPIKQDSSIGNEDE-SVRENL-APVENGLSDQDGEEEAQEPELPPSPVVCGEPVSCTA 806

  Fly   959 LSLDKEQNNRSA--------KECPKCKEQSPDSFTHSRTCLYL-------TQKELNKSALEKLAI 1008
            :||..|::..:.        ||.||.|.::......:|:.|.|       :::||::..| .||.
  Rat   807 VSLGLEKSKVTVTSKVASLKKEPPKEKPEALLKKRKARSMLPLSTSLDHRSKEELHRDCL-VLAT 870

  Fly  1009 V------LTED-SAKIDKSVLISKLFSSKVMAKELIATE-LTNLKHSNTKDIAPLCLAMSTFKLR 1065
            .      |.|| ||.:::...:. ||:.:.....::.|| ..:|:..:.:....|.|...  .|:
  Rat   871 ATHARAELHEDVSADLEERFHLG-LFTDRAALYRMMETEGKGHLESGHPELFHQLMLWKG--DLK 932

  Fly  1066 EELEQHIANKTLTERHVSLAPSVSFTLWQDCCRAYAKQMEEKGYIMHAATYLFSQGMQSEAIKLF 1130
            ..|:.......||:..|::||...:::|.....|:|||:..:...:.||:||.|.....||::|.
  Rat   933 GVLQAAAERGELTDSLVAVAPVAGYSVWLWAVEAFAKQLCFQDQYVKAASYLLSIHRVYEAVELL 997

  Fly  1131 LANEYYKEALVHARICLPATDPLIKTVINNWLEHLEGTGNFAAAA 1175
            .:|..|:||:..|:..|...||::|.:..:|...||..|::|.||
  Rat   998 RSNHLYREAIAVAKARLRPEDPVLKDLYLSWGSILERDGHYAIAA 1042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791 9/43 (21%)
WD40 repeat 167..204 CDD:293791 12/37 (32%)
WD40 446..719 CDD:475233 65/316 (21%)
WD40 613..874 CDD:475233 72/326 (22%)
WD40 repeat 617..654 CDD:293791 16/39 (41%)
WD40 repeat 659..691 CDD:293791 8/60 (13%)
WD40 repeat 693..732 CDD:293791 6/42 (14%)
WD40 repeat 744..785 CDD:293791 17/60 (28%)
WD40 repeat 793..831 CDD:293791 9/37 (24%)
WD40 repeat 838..861 CDD:293791 3/24 (13%)
Gemin5XP_006246458.1 WD40 22..456 CDD:441893 128/640 (20%)
WD40 repeat 68..107 CDD:293791 7/38 (18%)
WD40 repeat 112..149 CDD:293791 7/37 (19%)
WD40 repeat 154..193 CDD:293791 12/38 (32%)
WD40 repeat 199..269 CDD:293791 27/160 (17%)
WD40 repeat 287..329 CDD:293791 10/79 (13%)
WD40 308..710 CDD:441893 96/476 (20%)
WD40 repeat 336..374 CDD:293791 8/51 (16%)
WD40 repeat 382..422 CDD:293791 10/56 (18%)
WD40 repeat 429..454 CDD:293791 15/26 (58%)
WD40 repeat 474..538 CDD:293791 7/67 (10%)
WD40 repeat 542..575 CDD:293791 6/41 (15%)
WD40 repeat 582..619 CDD:293791 8/36 (22%)
WD40 repeat 642..679 CDD:293791 9/37 (24%)
WD40 repeat 685..710 CDD:293791 5/28 (18%)
COG3899 <864..1181 CDD:443106 51/183 (28%)

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