DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and Skic8

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_075680.1 Gene:Skic8 / 66317 MGIID:1917493 Length:305 Species:Mus musculus


Alignment Length:363 Identity:78/363 - (21%)
Similarity:122/363 - (33%) Gaps:153/363 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   459 WNTNTGAHAGKNYSKSKTAGKLNNVY----WLNNHVIV--SLSRHQLFFWSVEFERKMLRYKISK 517
            |.||.     |...::...|.|:::.    |.:..:.:  ||..|||...||:....:   .|:.
Mouse    24 WETNK-----KENIETVVTGSLDDLVKVWKWRDERLELQWSLEGHQLGVVSVDISHTL---PIAA 80

  Fly   518 DKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFGVRAMAECPDDMNK 582
            ..|...|::             :|...|.:|                               |..
Mouse    81 SSSLDAHIR-------------LWDLENGKQ-------------------------------MKS 101

  Fly   583 IALGCSDRRVAFFDISKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAFGTFDGTVGILDVERMKV 647
            |..|                   |:|:       :.||:||:...||.||..|.|.|..||    
Mouse   102 IDAG-------------------PVDA-------WTLAFSPDSQYLATGTHMGKVNIFGVE---- 136

  Fly   648 KTHLRTPHKKEVYSLVWQDHFIYFI-------------VNRVLGFFDLRKSKIEPTIVNCISRPS 699
                  ..||| |||..:..||..|             ::.::..||:...|:..|:     ...
Mouse   137 ------SGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-----EGH 189

  Fly   700 YLSIR------DSFLFV-GTDDGLLQIHERDSGMEKSWSPFIRQSAL------FARYVTDIAWCP 751
            .:.||      ||.|.| .:|||.::|::            ::.:.|      .|.:|.::|:||
Mouse   190 AMPIRSLTFSPDSQLLVTASDDGYIKIYD------------VQHANLAGTLSGHASWVLNVAFCP 242

  Fly   752 LDSNKFAVSGNDRSVYVMEFQPTERNWKT-----LHTF 784
             |...|..|.:|:||.|         |..     :|||
Mouse   243 -DDTHFVSSSSDKSVKV---------WDVGTRTCIHTF 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 446..719 CDD:475233 60/285 (21%)
WD40 613..874 CDD:475233 53/203 (26%)
WD40 repeat 617..654 CDD:293791 13/36 (36%)
WD40 repeat 659..691 CDD:293791 9/44 (20%)
WD40 repeat 693..732 CDD:293791 10/45 (22%)
WD40 repeat 744..785 CDD:293791 15/46 (33%)
WD40 repeat 793..831 CDD:293791
WD40 repeat 838..861 CDD:293791
Skic8NP_075680.1 WD40 <13..302 CDD:441893 78/363 (21%)
WD 1 14..57 7/37 (19%)
WD40 repeat 19..62 CDD:293791 9/42 (21%)
WD 2 62..101 12/85 (14%)
WD40 repeat 68..105 CDD:293791 10/83 (12%)
WD 3 104..143 19/75 (25%)
WD40 repeat 110..146 CDD:293791 19/46 (41%)
WD 4 146..187 7/45 (16%)
WD40 repeat 152..188 CDD:293791 5/40 (13%)
WD 5 188..227 11/50 (22%)
WD40 repeat 193..229 CDD:293791 11/47 (23%)
WD 6 230..269 13/48 (27%)
WD40 repeat 236..271 CDD:293791 14/45 (31%)
WD 7 272..305
Blue background indicates that the domain is not in the aligned region.

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