DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and wdr17

DIOPT Version :9

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:XP_009290943.1 Gene:wdr17 / 561804 ZFINID:ZDB-GENE-090313-131 Length:1309 Species:Danio rerio


Alignment Length:1239 Identity:227/1239 - (18%)
Similarity:400/1239 - (32%) Gaps:427/1239 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 HHTTNSVLMSYLANGNILSMD-----------ASDLVIYCVASNTYC-----RRSTF-----ISP 162
            :|:...:.||.:....:|:..           :.|...||.....|.     |.:.|     :|.
Zfish    10 YHSEPKIKMSQVKQVGLLAAGCQPWNKDVCAASGDRFAYCATLAIYVYQLDHRYNEFKLRAIMSE 74

  Fly   163 RNHQLTMVRCSPYNDNLFAVGTAMGNVLVCDLRKMNIVYKFHGHKAPICGLAWREVPAAEDEKTN 227
            ....:|.:...|:|..:||..:|...:::.::.:...|.:....|.....|:|.           
Zfish    75 HKKTITAISWCPHNPEVFASASADNLLIIWNVAEQKAVARLDNTKGIPASLSWC----------- 128

  Fly   228 NLALSAEEWRSRNGGQEEKPKTKPPPLTKSKAAESDDPFDIYNFDHLEYEFGAPIAERRRKSSED 292
                    |   |.|......:...||.....:..|....::.             |.....|:.
Zfish   129 --------W---NAGDSVAFVSHRGPLYIWTVSGPDSGVTVHK-------------EAHSFLSDI 169

  Fly   293 CGGEFVGLEKPAGAAVLDFVEACESVKAELLASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTIS 357
            |...:..|:|  |..|....:...|:        .:..::|.:   |...|              
Zfish   170 CLFRWHPLKK--GKVVFGHTDGSLSI--------FQPGSKHQK---HVLRP-------------- 207

  Fly   358 NKNDASDSTEGS-----LEVIQYSSSSDDAVIVDGEAAKPKREVLHHIYHQAEVHASGTPQTKSE 417
                  :|.||:     :..:::...|.|.::|                  |.:| :|.....||
Zfish   208 ------ESLEGTDEEDPITALEWDPLSTDYLLV------------------ANMH-NGIRLLDSE 247

  Fly   418 PQSNLQV--VPAISAETISLTSVNSTHLETLLVSIDGDE---VMMIWNTN------------TGA 465
            ....:..  .|:.:|....|..|.|..    .:.|.||.   |:.|||.:            ||.
Zfish   248 SLCCITTFSFPSAAASVQCLAWVPSAP----GMFITGDSQVGVLRIWNVSRATPLDNFKLKKTGF 308

  Fly   466 H---------AGKNYSKSKTAGKLNNVYWLNNHVIV---SLSRHQLFFWSVEFERKMLRYKISKD 518
            |         |.|::|.:..:   .|.|..:....|   :||::|.|               |..
Zfish   309 HALHVLNSPPAKKSFSSNSPS---KNHYTSSTSEAVPPPTLSQNQAF---------------SLP 355

  Fly   519 KSHS--CHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFGVRAMAEC---PD 578
            ..|:  |.:...|......:|:..:|    |.:|                  .|..:.:|   ||
Zfish   356 PGHAVCCFMDGGVGLYDMGAKKWDFL----RDLG------------------HVETIFDCKFKPD 398

  Fly   579 DMNKIALGCSDRRVAFFDISKLTTSCLPIDSVYVSSN----VYCLAWSP---NCLELAFGTFDGT 636
            |.|.:|....|..:..:||:.||       :||.|..    ||.|:|:|   ||  :|..|....
Zfish   399 DPNLLATASFDGTIKVWDINTLT-------AVYTSPGNEGVVYSLSWAPGDLNC--IAGATSRNG 454

  Fly   637 VGILDVERMKVKTHL-RTPH-KKEVYSLVWQDHFIYFIVNRVLGFFDLRKSKIEPTIVNCISRPS 699
            ..|.||::.|:.|.. ...| |..::.:.|                   ..|....|..|..   
Zfish   455 AFIWDVKKGKMITRFNELQHGKNGIFCVAW-------------------SHKDSKRIATCSG--- 497

  Fly   700 YLSIRDSFLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFARYVTDIAWCPLDSNKFAVSGNDR 764
                 |.|..:.|.||.: :|:           :...:|:|.     ..|...:.:..|....|:
Zfish   498 -----DGFCIIRTIDGKV-LHK-----------YKHPAAVFG-----CDWSQNNKDMIATGCEDK 540

  Fly   765 SVYVMEFQPTERNWKTLHTFTANTEKASITSMRWSHTQKHLLLTFHIEGKVCLWN-----C---- 820
            :|.|. :..|..: :.|..||.:|  |.:..:|||..::.:|.:...:|.|.:|:     |    
Zfish   541 NVRVY-YLATSSD-QPLKVFTGHT--AKVFHVRWSPLREGILCSGSDDGTVRIWDYTQDACINVL 601

  Fly   821 ---NAPEKPPLTITYHCPMWCGMFLPTNENIIMCSGK-ALSVELIDIKDALEGD----------- 870
               .||.:             |:...|....::.||. ..::.:.|.:|....|           
Zfish   602 SGHTAPVR-------------GLMWNTEVPYLLTSGSWDYTIRVWDTRDGTCLDTVYDHGADVYG 653

  Fly   871 ---------EKSICPKVDALLNVKWASKSLTQPYAPVLTAAEKKRQRRDQRKAAAKLEVDVANKD 926
                     ..:.|.: |:.:.: |   |||...||::..........|          .:.|.|
Zfish   654 LTCHPSRPFTMASCSR-DSTVRL-W---SLTPLIAPLVVNILTDHSWDD----------IIGNTD 703

  Fly   927 QKKIQESVTAVIDNPTNDKCTQETPVEEMLEALSLD-KEQNNRSAKECPKCKEQSPDSFTHSRTC 990
            :..:..:...:....:.|       :::.|:.||.| :.:..|...||     .||...:|    
Zfish   704 RAMVPGAPPLLCGKVSRD-------IKQELDKLSSDVRMKKLRWFSEC-----FSPPGGSH---- 752

  Fly   991 LYLTQKELNKSALEKLAIVLTEDSAKIDKSVLISKLFSSKVM-AKELI------ATELTNLKHSN 1048
                      :..:.:|::..:|.:      |:.:.:...:| .|.|:      |.|||.:|   
Zfish   753 ----------NLWDLVAVINGQDDS------LLPQYYGQGIMHMKHLVRFKTSEAQELTIVK--- 798

  Fly  1049 TKDIAPLCLAMSTF-----------KLREELEQHIANKTLT------------ERHVSLAPSVSF 1090
                      ||.|           :|:...|.||....:.            |:.:|:||.||.
Zfish   799 ----------MSKFGGGIGAPSKEERLKNAAEIHIRLGQIQRYCELMVELGEWEKALSVAPGVSM 853

  Fly  1091 TLWQDCCRAYAKQMEEKGYIMHAATYLFSQGMQSEAIKLFLANEYYKEALVHARICLPAT--DPL 1153
            ..|:...:..|.|:.::|. .....|..:.|...:.:..|.:....|||::.|:......  .|.
Zfish   854 KYWKKLMQRRADQLMQEGN-DDVIPYCIATGEVKKLVNFFTSRGQLKEAVLVAQGACEGNIHVPQ 917

  Fly  1154 IKTVINNWLEHLEGTGNFAAAALICVLDNEMLRGYSYLRKYRNCTPEIADLMDQIKRIGQLGGVL 1218
            |.::            |.||.:     ||:.:..|..: .:|.| .|:|:...|           
Zfish   918 ITSI------------NHAANS-----DNDNIEKYCGM-LHRVC-KELAEWYFQ----------- 952

  Fly  1219 DGCA 1222
            ||||
Zfish   953 DGCA 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 <80..>215 CDD:295369 20/116 (17%)
WD40 80..>215 CDD:225201 20/116 (17%)
WD40 repeat 116..160 CDD:293791 10/61 (16%)
WD40 repeat 167..204 CDD:293791 7/36 (19%)
WD40 434..821 CDD:225201 93/439 (21%)
WD40 446..719 CDD:295369 68/313 (22%)
WD40 613..874 CDD:295369 57/302 (19%)
WD40 repeat 617..654 CDD:293791 13/40 (33%)
WD40 repeat 659..691 CDD:293791 2/31 (6%)
WD40 repeat 693..732 CDD:293791 7/38 (18%)
WD40 repeat 744..785 CDD:293791 7/40 (18%)
WD40 repeat 793..831 CDD:293791 10/49 (20%)
WD40 repeat 838..861 CDD:293791 4/23 (17%)
wdr17XP_009290943.1 WD40 <37..438 CDD:225201 96/538 (18%)
WD40 <67..291 CDD:295369 49/314 (16%)
WD40 repeat 80..117 CDD:293791 7/36 (19%)
WD40 repeat 122..159 CDD:293791 8/58 (14%)
WD40 repeat 167..211 CDD:293791 11/76 (14%)
WD40 repeat 219..256 CDD:293791 8/55 (15%)
WD40 repeat 264..328 CDD:293791 16/67 (24%)
WD40 repeat 351..385 CDD:293791 8/52 (15%)
WD40 <367..688 CDD:225201 84/417 (20%)
WD40 385..677 CDD:238121 75/384 (20%)
WD40 repeat 390..428 CDD:293791 14/44 (32%)
WD40 repeat 434..474 CDD:293791 13/41 (32%)
WD40 repeat 479..514 CDD:293791 10/73 (14%)
WD40 repeat 521..559 CDD:293791 8/44 (18%)
WD40 repeat 565..602 CDD:293791 8/36 (22%)
WD40 repeat 608..645 CDD:293791 7/49 (14%)
WD40 repeat 651..676 CDD:293791 2/26 (8%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D326439at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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