DRSC/TRiP Functional Genomics Resources

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Protein Alignment rig and CG3909

DIOPT Version :10

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_649969.1 Gene:CG3909 / 41226 FlyBaseID:FBgn0027524 Length:331 Species:Drosophila melanogaster


Alignment Length:346 Identity:75/346 - (21%)
Similarity:134/346 - (38%) Gaps:77/346 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   505 EFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMADFYGTVAFG 569
            :|::|..|   .||...:..|.|:|.         :|..:.:..:.:.:...|.        |.|
  Fly    43 DFDKKEAR---PKDFLVTGGLDDLVK---------VWDLQEDNTLKLRHKLKGH--------ALG 87

  Fly   570 VRAMAECPDDMNKIALGCSDRRVAFFDI----SKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAF 630
            |.::|...|... ||....|..:..:|.    .|...|..|:|       ::.:.:||....:..
  Fly    88 VVSVAVSSDGQT-IASSSLDSTMCLWDARSGDKKHLLSFGPVD-------LWTVQFSPCNKYVIS 144

  Fly   631 GTFDGTVGILDVERMKVKTHLRTPHKKEVYSLVWQDHFIYF---IVNRVLGFFDLRKSKIEPTIV 692
            |..||.:.:..||..|.:..|...:.|...|:.:.....|.   .::.::..||:...|:..|:.
  Fly   145 GLNDGKISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVAAGKVVQTLE 209

  Fly   693 N--------CISRPSYLSIRDSFLFVGTDDGLLQIHERDSGMEKSWSPFIRQSALFARYVTDIAW 749
            .        |.|..|.|      |...:|||.::::      :.:.|..:...:..|.:|..:|:
  Fly   210 GHAMPVRSLCFSPNSQL------LLTASDDGHMKLY------DVTHSDVVGTLSGHASWVLCVAF 262

  Fly   750 CPLDSNKFAVSGNDRSVYVMEFQPTERNWKTLHTFTANTEKASITSMRWSHTQKHLLLTFHIEGK 814
            .. |...||.|.:|.||.:  :..:||  |.||||..:|::  :..:|:|.....:         
  Fly   263 SE-DGKHFASSSSDNSVKI--WDTSER--KCLHTFAEHTDQ--VWGVRYSPGNDKV--------- 311

  Fly   815 VCLWNCNAPEKPPLTITYHCP 835
                 .:|.|...|.| |:||
  Fly   312 -----ASASEDKSLNI-YYCP 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 446..719 CDD:475233 47/228 (21%)
WD40 613..874 CDD:475233 52/234 (22%)
WD40 repeat 617..654 CDD:293791 9/36 (25%)
WD40 repeat 659..691 CDD:293791 5/34 (15%)
WD40 repeat 693..732 CDD:293791 8/46 (17%)
WD40 repeat 744..785 CDD:293791 15/40 (38%)
WD40 repeat 793..831 CDD:293791 5/37 (14%)
WD40 repeat 838..861 CDD:293791
CG3909NP_649969.1 WD40 <54..323 CDD:441893 67/327 (20%)
WD40 repeat 89..127 CDD:293791 8/38 (21%)
WD40 repeat 130..166 CDD:293791 8/35 (23%)
WD40 repeat 174..209 CDD:293791 6/34 (18%)
WD40 repeat 215..251 CDD:293791 9/47 (19%)
WD40 repeat 257..293 CDD:293791 15/40 (38%)
WD40 repeat 299..323 CDD:293791 6/38 (16%)
Blue background indicates that the domain is not in the aligned region.

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