DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rig and CG30116

DIOPT Version :9

Sequence 1:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster


Alignment Length:1073 Identity:180/1073 - (16%)
Similarity:329/1073 - (30%) Gaps:408/1073 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 RDVRVVHHT--------------TNSVLMSYLA--------NGNILSMDASDLVIYC-------- 147
            ||:.::::|              ..|.|:|:|.        :.::|||.......:|        
  Fly   810 RDIELIYYTIRKSSDVLTRDPMQLGSQLISWLRPISEHDDDDNSLLSMTVRSATAWCDGYAVPLL 874

  Fly   148 ------------------VASNTYCRRSTFISPRNHQLTMVRCSPYNDNLFAVGTAMGNVLVCDL 194
                              ..|.|.|.|:.:::|....|.:             .|:.|:|....:
  Fly   875 VPLTGWLPAPLPSQIRTMTVSGTGCIRAVWLAPSKQHLIL-------------ATSSGDVQQWHI 926

  Fly   195 RKMNIVYKFHGHKAPI-CGLAWREVPAAEDEKTNNLALSAEEWRSRNGGQEEKPKTKPPPLTKSK 258
            ...::.:.|.||.|.: |.|.                                            
  Fly   927 MSNSLDHIFKGHTAAVTCLLV-------------------------------------------- 947

  Fly   259 AAESDDPFDIYNFDHLEYEFGAPIAERRRKSSEDCGGEFVGLEKPAGAAVLDFVEACESVKAELL 323
            |.:||                   :|.....|||             |.||.:.......:|.: 
  Fly   948 APQSD-------------------SELLLTGSED-------------ATVLVWHVGLRERRAHI- 979

  Fly   324 ASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTISNKNDASDSTEGSLEVIQYSSSSDDAV-IVDG 387
                  |..|             |.|::..:.            |:...:..|||.|.:: |.|.
  Fly   980 ------KNAH-------------TAPITGVAA------------GANNTLIISSSEDASIAITDL 1013

  Fly   388 EAAKPKREVLHHIYHQAEVHASGTPQTKSEPQSNLQVVPAISA-------ETI------SLTSVN 439
            .:.|.:..:.||                ..|.|.:.|..|...       .||      :.|.:|
  Fly  1014 ASGKLRHRITHH----------------RGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLN 1062

  Fly   440 STHLETLLVSIDGDEVMMIWNT---------NTGAHAGKNYSKSKTAGKLNNVYWLNNHVIVSLS 495
            :..:.:.::.||     :.||:         |.      .|.::...||  .::.|..|      
  Fly  1063 TMQMTSAVLRID-----ISWNSVFLLALCEDNA------LYVRTLATGK--ELHTLKGH------ 1108

  Fly   496 RHQLFFWSVEFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMA 560
                       :.|:....|.|| |..|.:      .||.::.:|:.....:.:..:.|..|.:.
  Fly  1109 -----------KSKIRSISIGKD-SQRCVV------GCDDTRALIYDMHAGKLVRSLPPNPGPVT 1155

  Fly   561 --------DFYGTVA------FGVR----------------------AMAE-----------CPD 578
                    ||..||.      :..|                      |.|:           |.|
  Fly  1156 AVHAMDNDDFLVTVGGNKITFYSFRNEELYVNPYSRHPRRKRSLKRHAQAQRSPSTTLPPITCFD 1220

  Fly   579 ---DMNKIALGCSDRRVAFFDISKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAFGTFDGTVGIL 640
               |..::|: .|.|.|....|:.....|.....   ::.|.||.::||...||.|:.|      
  Fly  1221 LSRDSQQMAI-ASGRHVHLMRINTPEYQCTLEGH---TAGVSCLKFAPNGEFLATGSED------ 1275

  Fly   641 DVERMKVKTHLRTPHKKEVYSLVWQDHFIYFIVNRVLG-FFDLRKSKIEPTIVNCISRPSYLSIR 704
                       |..|       :|         |..|| ..:..|....|.:       ..:.:.
  Fly  1276 -----------RLVH-------IW---------NLALGEICNSFKGHTAPVV-------KVVVLM 1306

  Fly   705 DSFLFVGTD-DGLLQIHERDSG--MEKSWSPFIRQSALFARYVTDIAWCPLDSNKFAVSGN-DRS 765
            ||...:.|| |.:|.:....||  ::....|:...|      ||       ::.:||||.| |.:
  Fly  1307 DSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYKSLS------VT-------NNMRFAVSTNGDNT 1358

  Fly   766 VYVMEFQPTERNWKTLHTFTANTEKASITSMRWSHTQKHLLLTFHIEG----KVCLWNCNAPEKP 826
            :.:......:..:...|:       ..||....|....|:     |.|    .:.:|.....:..
  Fly  1359 LKIWSLTQEDEKYSVSHS-------DEITCFEISADSVHI-----ISGSRDMSLKVWQATGGKLS 1411

  Fly   827 PLTITYHCPMWCGMFLPTNENIIMCSGKALSVELIDIKDALEGDE-KSICPKVDALLNVKWASKS 890
            .:.:.:...:.|.....||:..::...|.:::.|.|:   |.|:| .::...:..::.||.::..
  Fly  1412 QVLVGHSDAVTCVAVSVTNKTQVLSGSKDMNLILWDL---LTGEEVHTLAGHLGPVIGVKVSADG 1473

  Fly   891 LTQPYAPVLTAAEKK-----RQRRDQRKAAAKLEVDVANKD-QKKIQESVTAVIDN---PTNDKC 946
            .|     .::.::.|     ..:|.....:.::.|...:.| ..::...:..::|:   |.  .|
  Fly  1474 ST-----AVSGSDDKTLIVWETKRGLALTSLQMHVPFTHFDISLEVSRVLVQLVDSYNLPV--IC 1531

  Fly   947 TQETPVEEM---------LEALSLDKEQNNRSAKECPKCKEQSPDSFTHSRTCLYLTQKELNKSA 1002
            ...||.:.:         .:...|..:...|..|...| ||.|.|::|..:...:||...:....
  Fly  1532 LHNTPAQYVKLPTYSGPSKDVEDLRPQGPKRQMKRLLK-KEVSLDTYTWQKKYGHLTSSVMMAQV 1595

  Fly  1003 LEKLAIVLTEDSAKIDKSVLISKLFSSKVMAKE 1035
            .|:|....:. ||.:::   |||:..:|..|.:
  Fly  1596 DERLKRRFSV-SASMEE---ISKIAETKTGASQ 1624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rigNP_611499.3 WD40 <80..>215 CDD:295369 26/150 (17%)
WD40 80..>215 CDD:225201 26/150 (17%)
WD40 repeat 116..160 CDD:293791 13/91 (14%)
WD40 repeat 167..204 CDD:293791 4/36 (11%)
WD40 434..821 CDD:225201 82/454 (18%)
WD40 446..719 CDD:295369 60/333 (18%)
WD40 613..874 CDD:295369 52/270 (19%)
WD40 repeat 617..654 CDD:293791 9/36 (25%)
WD40 repeat 659..691 CDD:293791 6/32 (19%)
WD40 repeat 693..732 CDD:293791 8/41 (20%)
WD40 repeat 744..785 CDD:293791 9/41 (22%)
WD40 repeat 793..831 CDD:293791 7/41 (17%)
WD40 repeat 838..861 CDD:293791 4/22 (18%)
CG30116NP_725799.1 AAA_16 359..505 CDD:289934
WD40 repeat 901..937 CDD:293791 7/48 (15%)
WD40 933..1282 CDD:238121 88/546 (16%)
WD40 repeat 942..982 CDD:293791 14/122 (11%)
WD40 repeat 988..1024 CDD:293791 8/47 (17%)
WD40 1022..1484 CDD:225201 102/591 (17%)
WD40 repeat 1029..1064 CDD:293791 7/34 (21%)
WD40 repeat 1071..1106 CDD:293791 8/47 (17%)
WD40 repeat 1112..1147 CDD:293791 8/41 (20%)
WD40 repeat 1216..1252 CDD:293791 9/36 (25%)
WD40 1248..1502 CDD:238121 58/329 (18%)
WD40 repeat 1258..1294 CDD:293791 14/68 (21%)
WD40 repeat 1299..1335 CDD:293791 8/42 (19%)
WD40 repeat 1340..1374 CDD:293791 9/46 (20%)
WD40 repeat 1379..1415 CDD:293791 7/40 (18%)
WD40 repeat 1421..1458 CDD:293791 9/39 (23%)
WD40 repeat 1464..1488 CDD:293791 4/28 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.